Methods for differentiation of human pluripotent stem cells to brain microvascular endothelial cells

ABSTRACT

Methods for generating functional brain microvascular endothelial cells (BMECs) under chemically defined, serum-free conditions are provided. In particular, efficient and cost-effective methods for generating functional BMECs under chemically defined culture conditions are provided. BMECs obtained according to the methods provided herein are suitable for in vitro blood brain barrier (BBB) formation.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims the benefit of U.S. Application Ser. No. 62/318,405, filed Apr. 5, 2016, which is incorporated herein as if set forth in its entirety.

STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT

This invention was made with government support under NS085351 awarded by the National Institutes of Health. The government has certain rights in the invention.

BACKGROUND

The blood-brain barrier (BBB) is a dynamic interface between the blood and the central nervous system (CNS) that controls the influx and efflux of biological substances needed for the brain's metabolic processes, as well as for neuronal function. The BBB comprises specific endothelial cells, brain microvascular endothelial cells (BMECs), which are critical for maintaining homeostasis of the brain microenvironment and neurological health.

In vitro BBB models have been developed to study the molecular mechanisms underlying development of the BBB and to screen for drugs and other chemical compounds that affect BBB integrity. Naik & Cucullo, J Pharm Sci. 2012, 101(4):1337-54; Lippmann et al., Nature Biotechnology 2012, 30:783-791. In order to understand development of the BBB and mechanisms underlying neurological diseases, it is critical to have a renewable source of human BMECs. However, existing methods for differentiating human pluripotent stem cells to BMECs use undefined culture systems that exhibit line-to-line variability, making the methods poorly suited for clinical applications and large scale production. Accordingly, there remains a need in the art for efficient and cost-effective protocols for generating functional brain microvascular endothelial cells under chemically defined culture conditions.

BRIEF SUMMARY

In a first aspect, provided herein is a method for generating a population of human brain microvascular endothelial cells (BMECs) from human pluripotent stem cells, where the method comprises, in order, (a) culturing human pluripotent stem cells for about 24 hours in a chemically defined, serum-free culture medium that comprises an activator of Wnt/β-catenin signaling, whereby cells that express mesodermal markers are obtained; (b) culturing the cells expressing mesodermal markers for about 5 days in the presence of a chemically defined, serum-free culture medium comprising B27 supplement, whereby cells that express endothelial progenitor marker Flk-1 are obtained; and (c) culturing the Flk-1+ cells of (b) for about two days in the presence of a chemically defined, serum-free endothelial medium comprising B27 supplement, bFGF/FGF2, and retinoic acid (RA), whereby a cell population comprising human BMECs is obtained.

In some cases, at least 95% of cells of the cell population of (c) are BMECs cells positive for expression of CD31⁺, p-glycoprotein⁺ (Pgp⁺), and claudin-5⁺. The method can further comprise growing the human BMECs of step (c) as a monolayer to confluence. In some cases, the method comprises taking an initial transendothelial electrical resistance (TEER) measurement of the confluent monolayer, where the TEER measurement is greater than 2000 Ohm (Ω)×cm².

The activator of Wnt/β-catenin signaling can be a Gsk3 inhibitor. The Gsk3 inhibitor can be a small molecule selected from the group consisting of CHIR99021, CHIR98014, BIO-acetoxime, BIO, LiCl, SB216763, SB415286, AR A014418, 1-Azakenpaullone, and Bis-7-indolylmaleimide. The Gsk3 inhibitor can be CHIR99021 and present in a concentration of about 3 μM to about 12 μM. Preferably, no cell separation or selection step is used to obtain the cell population comprising BMECs.

In another aspect, provided herein is a human BMEC cell population according to the methods described herein.

These and other features, objects, and advantages of the present invention will become better understood from the description that follows. In the description, reference is made to the accompanying drawings, which form a part hereof and in which there is shown by way of illustration, not limitation, embodiments of the invention. The description of preferred embodiments is not intended to limit the invention to cover all modifications, equivalents and alternatives. Reference should therefore be made to the claims recited herein for interpreting the scope of the invention.

BRIEF DESCRIPTION OF THE DRAWINGS

This patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.

The present invention will be better understood and features, aspects and advantages other than those set forth above will become apparent when consideration is given to the following detailed description thereof. Such detailed description makes reference to the following drawings, wherein:

FIGS. 1A-1J present a schematic of BMEC differentiation protocol and progression of differentiation. (A) Singularized hPSCs are seeded on six-well plates coated with Matrigel®, vitronectin or SyntheMAX™ substrate and expanded for 3 days in mTeSR1™. Differentiation to primitive streak is initiated by 24 hour treatment with 6 μM CHIR99201 in DeSR1. Cells progress to intermediate mesoderm and endothelial progenitors during culture in serum-free defined DeSR2 medium. At day 6, BMEC specification is induced by culture in hESFM (“Human Endothelial-SFM,” a basal serum-free growth medium that supports endothelial cells) supplemented with 2% B27 (50×), 10 μM RA and 20 ng/ml b-FGF/FGF2 (known as “hECSR1”) for two days. After replating on Matrigel® or fibronectin/collagen IV substrates, BMECs are obtained. (B) The pluripotent state of expanded hPSCs was verified prior to differentiation by immunostaining for OCT4 (B), NANOG (C) and TRA1-60 (D). Expression of the primitive streak marker Brachyury was assessed by immunostaining (E) and flow cytometry (F) 24 hours after CHIR99021 treatment. On day 4 of differentiation, expression of the intermediate mesoderm marker PAX2 was quantified (G, H) and on day 5 the endothelial progenitor marker Flk-1 analyzed (I, J). Scale bar 100 μm.

FIGS. 2A-2K present data demonstrating that hPSC-derived BMECs express key BMEC proteins and have similar gene profiles as primary human BMECs. At day 10, BMECs differentiated as shown in FIG. 1A were characterized by (A) immunostaining and (B-I) flow cytometry for key endothelial and BMEC markers. Scale bar, 100 μm. (J) Hierarchical clustering of whole transcripts was plotted using GENE-E. Fastq files of undifferentiated hPSCs and hPSC-derived ectoderm, endoderm, mesoderm were downloaded from GEO or ArrayExpress. Hierarchical clustering analysis of RNA-seq expression data of undifferentiated hPSCs, hPSC-derived endoderm (Endo), ectoderm (Ecto), and mesoderm (Mes), BMECs differentiated under defined conditions as illustrated in FIG. 1A (“D-BMEC1,2,3” refers to three batches of BMECs differentiated using same defined method); IMR90-4-derived BMECs at day 10), BMECs differentiated in unconditioned medium (UM-BMEC), and human primary BMECs (hBMEC). A hierarchical clustering was performed on the log 2 transformed gene counts. Distances were computed using one minus pearson correlation with average linkage. (K) A set of 506 tight junction and transporter genes (see Table 3 in the Examples section) was used to investigate the gene expression similarity between human BMECs, hPSC-derived BMECs differentiated under defined condition, and hPSC-derived BMECs differentiated in unconditioned-medium (UM) [32]. The gene set included: 20 tight junction related genes [1,51-54], all 25 CLDN genes, all 407 solute carrier (SLC) transporters, and all 53 ATP-binding cassette (ABC) transporters. CLDN, SLC and ABC genes were included without a prior knowledge of BBB association. A threshold of >1 FPKMs was used to define expressed vs. non-expressed transcripts.

FIGS. 3A-3K demonstrate that hPSC-derived BMECs exhibit key BBB phenotypes. hPSC-derived BMECs were differentiated as illustrated in FIG. 1A. (A) Immunofluorescent images of von Willebrand factor (vWF, red) and DAPI nuclear staining (blue) in hPSC-derived BMECs at day 10. (B) hPSC-derived BMECs were dissociated with Accutase™ and replated 2×10⁵ cells/well of a 24-well plate coated with 300 μL of 10 mg/L Matrigel®. After 24 hour of culture in hECSR2 supplemented with 50 ng/mL VEGF, brightfield images were taken. (C) hPSC-derived BMECs at day 10 were analyzed with a LDL Uptake Assay Kit. Culture medium was aspirated and replaced with LDL-Dylight™ 550 working solution and visualized by fluorescent microscopy. LDL is shown in red on a merged brightfield image. (D-F) ICAM-1 induction in hPSC-derived BMECs. hPSC-derived BMECs at day 10 were treated with 10 ng/mL of TNF-α for 16 hours. Cells were stained for ICAM-1 (D) before and (E) after TNF-α treatment. (F) Cells were dissociated or dissociated with Accutase™ and ICAM-1 expression quantified by flow cytometry before and after TNF-α treatment. Efflux transporter activities were measured by the intracellular accumulation of (G) rhodamine 123, (H) Hoechst and (I) 2′,7′-dichlorofluorescein diacetate (DCFDA) substrates for Pgp, BCRP, and MRP, respectively. CsA, Ko143, and MK571 were used as specific inhibitors of Pgp, BCRP, and MRP, respectively. (J) The polarization of Pgp was measured by rhodamine 123 transport across the BMEC monolayer from the apical side to the basolateral side and a reversed Pgp-transport assay (from the basolateral side to the apical side) was carried out to assess the polarization of Pgp. Inhibitor-treated samples were independently normalized to each respective non-inhibitor-treated control sample. Data were collected at least from three independent samples and are represented as mean±SEM. **p<0.01, ***p<0.001. (K) TEER was measured in hPSC-derived BMECs co-cultured with astrocytes, neurons, and pericytes. hPSC-derived BMECs were co-cultured with primary human pericytes for 24 hours in hECSR1 medium. Following co-culture with pericytes, BMECs were co-cultured with EZ-sphere derived neurons and astrocytes (1:3) in hECSR2 for the remainder of the experiment. TEER was measured as a function of time following initiation of co-culture. Data were collected from at least three independent replicates and are plotted as mean±SEM. *p<0.05. **p<0.01. Scale bar 100 μm.

FIGS. 4A-4J demonstrate that initial seeding density is critical for BMEC differentiation. (A) hPSCs were seeded at the indicated densities (from 8.8 k/cm² to 140 k/cm²) and differentiated to BMECs as illustrated in FIG. 1A. TEER was measured two days after replating on Transwell® membranes at 10⁶ cells/cm². (B) TEERs of hPSC-derived BMECs were measured daily for 7 days after replating on Transwell® membranes. Data were collected from at least three independent replicates and are plotted as mean±SEM. ***p<0.001. (C-E) The percentage of claudin-5-positive cells and expression levels of claudin-5 were quantified by flow cytometry at day 8 for cells differentiated at the indicated seeding density (cells/cm²). (F) The localization of claudin-5 in cells differentiated at different seeding densities was investigated by immunostaining. White arrows indicate areas lacking claudin-5 expression, and red arrows indicate non-uniform or discontinuous claudin-5. (G-I) The percentage of occludin-positive cells and expression levels of occludin were quantified by flow cytometry at day 8 for cells differentiated at the indicated seeding density (cells/cm²). (J) The localization of occludin in cells differentiated at different seeding densities was investigated by immunostaining. White arrows indicate areas lacking occludin expression and red arrows indicate areas with non-uniform occludin. Flow cytometry plots are representative of at least 3 independent experiments. Numbers indicate the mean fraction of cells in the gated region±SEM. Scale bar 100 μm.

FIGS. 5A-5J demonstrate that retinoic acid (RA) induces acquisition of key BMEC phenotypes in EC progenitors. BMECs were differentiated as shown in FIG. 1A in the presence or absence of RA, as indicated. (A) At day 8 expression of tight junction and transporter genes was assessed by qPCR. (B) Flow cytometry for CD31 expression was performed at days 6 and 8. (C) Pgp expression was quantified by flow cytometry at day 10. At day 6, medium was switched to hESFM containing or lacking RA, as indicated. (D) At day 8, cells were replated onto Matrigel®-coated Transwell® membranes at 10⁶ cells/cm² in the presence or absence of 10 μM Y27632 (ROCK inhibitor). Y27632 was added to increase attachment (Pipparelli et al., PloS one 2013, 8:e62095) of cells differentiated in the absence of RA and permit confluent monolayer formation. TEER was measured at day 10, two days after replating (D). (E, G) Occludin and (F, G) ZO-1 expression and localization were assessed by flow cytometry and immunostaining at day 10. Red arrows indicate non-uniform occludin or ZO-1. Claudin-5 expression at day 10 was assessed by flow cytometry (H, I). (I) At day 10, expression level of claudin-5 in BMECs differentiated in the presence or absence of RA were assessed by flow cytometry. (J) Localization and expression of claudin-5 of cells differentiated in the absence of RA was determined via immunostaining (white arrows indicate non-positive claudin-5 and red arrows indicate discontinuous claudin-5). Images and flow cytometry plots are representative of at least 3 independent experiments. Data from at least three independent replicates are plotted as mean±SEM. *p<0.05, **p<0.01, ***p<0.001. Scale bar 100 μm.

FIG. 6 presents graphs demonstrating gene expression during hPSC differentiation to BMECs. Quantitative RT-PCR was used to quantify the expression of the indicated genes expression during hPSC differentiation to BMECs using the process illustrated in FIG. 1A. Genes analyzed include the pluripotency transcription factor NANOG, primitive streak markers T and MIXL1, intermediate mesoderm marker PAX2, endothelial cell progenitor marker CD34, endothelial adhesion molecule CDH5, tight junction genes TJP1, CLDN5 and OCLN, and efflux transporter ABCB1. GAPDH was used as an endogenous housekeeping gene control. Data are represented as mean±SEM of at least three biological replicates.

FIGS. 7A-7B are images showing BMECs differentiated from H9 hESCs and 19-9-11 iPSCs express EC and BMEC-related protein. Immunostaining of EC (CD31) and BMEC (Glut1, ZO-1, Claudin-5, occludin, MRP1, BCRP, Pgp) proteins in day 10 BMECs differentiated from (A) H9 hESCs and (B) 19-9-11 iPSCs as shown in FIG. 1A. Images are representative of at least three independent differentiation experiments in each cell line. Scale bar 100 μm.

FIGS. 8A-8B are images demonstrating that BMECs differentiated on SyntheMAX™ and vitronectin express EC and BMEC-related proteins. Immunostaining of EC (C31, VE-cadherin) and BMEC (Glut1, ZO-1, Claudin-5, occludin, MRP1, BCRP, Pgp) proteins in day 10 BMECs differentiated as shown in FIG. 1A from IMR90-4 hiPSCs on (A) SyntheMAX™ and (B) vitronectin. Images are representative of at least three independent differentiation experiments on each matrix. Scale bar 100 μm.

FIG. 9 demonstrates that BMECs differentiated from hPSCs in defined and undefined protocols exhibit similar Pgp activities. hPSC-derived BMECs were differentiated either as illustrated in FIG. 1A (defined BMECs) or as described previously (UM (Wilson et al., Fluids and Barriers of the CNS 2015, 12:13)). Pgp activities were evaluated by the intracellular accumulation of rhodamine 123 (left bar graph) or rhodamine 123 transport across the BMEC monolayer from the apical side to the basolateral side (right bar graph). Data were collected from at least three biological replicates for each group and are presented as mean±SEM. **p<0.01; ***p<0.001.

FIG. 10 demonstrates that BMECs differentiated at different seeding densities express Flk-1 and CD31. Flow cytometry was used to quantify the Flk1-positive (Flk1+) population at day 5 and the CD31-positive population at day 10 in hPSC-derived BMECs differentiated as shown in FIG. 1A. hPSCs were plated at the indicated density from 8.8 k cells/cm² to 140 k cells/cm² at day −3. Plots are representative of at least three replicates, for which mean±SEM are indicated in each plot.

FIG. 11 demonstrate that BMECs differentiated at different seeding densities express Pgp. Flow cytometry was used to quantify the Pgp-positive population at days 8 and 10 in hPSC-derived BMECs differentiated as shown in FIG. 1A. hPSCs were plated at the indicated density from 8.8 k cells/cm² to 140 k cells/cm² at day −3. Plots are representative of at least three replicates, for which mean±SEM are indicated in each plot.

FIGS. 12A-12B demonstrate that BMECs differentiated at different seeding densities express related BMEC proteins, but the BMEC proteins are not nicely localized. IMR90-4 hiPSCs were differentiated to BMECs at the indicated day −3 seeding densities (cells/cm²) on Matrigel® using the protocol shown in FIG. 1A. (A) Immunofluorescent images for EC (CD31, VE-cadherin) and BMEC (ZO-1, MRP1, BCRP) markers were acquired at day 10. Scale bar, 100 μm. (B) The percentage of ZO-1-positive cells at days 8 and day 10 was quantified by flow cytometry. Images and flow cytometry plots are representative of at least three independent replicates. Data were collected at least from three replicates for each group and presented as mean±SEM.

FIG. 13 presents TEER of BMECs differentiated from different hPSC lines. Different hPSC lines, including IM90-4, H9, 19-9-11 hPSCs, were seeded at a density of 35 k cells/cm² and differentiated to BMECs as illustrated in FIG. 1A. TEER was measured two days after replating on Transwell® membranes at 10⁶ cells/cm². Data were collected at least from three biological replicates for each group and presented as mean±SEM.

FIG. 14 presents TEER in BMECs differentiated from hPSCs at different seeding densities. IMR90 iPSCs were differentiated to BMECs via the protocol illustrated in FIG. 1A at the indicated day −3 seeding density (cells/cm2) on vitronectin (“VTN”), SyntheMAX™ (“SYN”), or Matrigel®. TEER was measured daily after seeding cells on Transwell® filters (Day 0). Data represent mean±SEM of at least three biological replicates.

FIG. 15 demonstrates that BMECs differentiated in the absence of RA exhibit low expression and mislocalization of EC and BMEC proteins. The images demonstrate immunostaining of markers of EC (CD31, VE-cadherin) and BMEC (Glut1, MRP1) in BMECs differentiated as shown in FIG. 1A from IMR90-4 iPSCs, but differentiated in the absence of RA from day 6 to day 9. Images were taken at day 10 and are representative of at least three biological replicates. Scale bar 100 μm.

While the present invention is susceptible to various modifications and alternative forms, exemplary embodiments thereof are shown by way of example in the drawings and are herein described in detail. It should be understood, however, that the description of exemplary embodiments is not intended to limit the invention to the particular forms disclosed, but on the contrary, the intention is to cover all modifications, equivalents and alternatives falling within the spirit and scope of the invention as defined by the appended claims.

DETAILED DESCRIPTION

All publications, including but not limited to patents and patent applications, cited in this specification are herein incorporated by reference as though set forth in their entirety in the present application.

Existing methods for differentiating human pluripotent stem cells into brain microvascular endothelial cells (BMECs) use undefined culture systems that tend to exhibit line-to-line variability, including variability in cell density at the start of each differentiation protocol. See, e.g., U.S. patent application Ser. No. 13/155,435 (incorporated by reference herein). The methods and compositions provided herein are based at least in part on the Inventors' discovery of a robust, chemically defined, and serum-free method for directing differentiation of human pluripotent stem cells (hPSCs) to BMECs. The current invention uses a defined system comprised of an activator of Wnt/β-catenin signaling and retinoic acid in a chemically defined, serum free medium. As described in this section and in the Examples that follow, pluripotent stem cell-derived BMECs exhibit endothelial properties, including tube formation and LDL uptake, as well as BMEC-specific efflux transporter activities. Notably, hPSC-derived BMECs cells exhibit physiologic transendothelial electrical resistance (TEER) (around 3000 Ω·cm²). In this manner, the methods described herein provide an unlimited supply of BMECs having properties comparable to those of primary BMECs.

Accordingly, in a first aspect, provided herein is a method for generating BMEC cells, where the method comprises differentiating hPSCs under conditions that promote differentiation of the hPSCs into BMECs cells. A preferred embodiment of the method is described in FIG. 1A. In general, the method of the present invention has the following steps:

Human pluripotent stem cells (hPSCs) are cultured for about 24 hours in a chemically defined, serum-free culture medium comprising an activator of Wnt/β-catenin signaling. As described elsewhere in this document, hPSCs include both hESCs and iPSCs. Any chemically defined, unconditioned (meaning, free of conditioning by mouse fibroblast feeders or other feeder cells) culture medium can be used provided that it comprises an activator of Wnt/β-catenin signaling. In preferred embodiments, the chemically defined, serum-free medium comprises DMEM/F12, 0.5% GlutaMax, 1% MEM-NEAA, 100 μm β-mercaptoenthanol. Various activators of Wnt/β-catenin signaling that can be used are described elsewhere in this document. This process directs hPSCs through mesodermal lineages as evidenced by expression of mesoderm-specific genes and proteins such as brachyury/T and PAX2.

In a second step, the cells expressing mesoderm-specific markers obtained in the first step are cultured for about 5 days in the presence of a chemically defined, serum-free culture medium comprising a defined, serum-free B27 supplement, whereby cells that express endothelial progenitor marker Flk-1 are obtained. In preferred embodiments, the chemically defined, serum-free medium is DMEM/F12 supplemented with B27 (“DMEM/F12/B27”). B27 is commercially available from suppliers such as Invitrogen.

Next, the Flk-1⁺ cells are cultured for about two days in the presence of a chemically defined, serum-free endothelial medium comprising B27 supplement and retinoic acid (RA), whereby a cell population comprising human BMECs is obtained. In preferred embodiments, the chemically defined, serum-free endothelial medium is human Endothelial Serum-Free Medium (hESFM) (Invitrogen) supplemented with B27 and about 10 μM retinoic acid (RA). RA enhances the functional properties and maturation of BMECs. In some cases, the endothelial medium further comprises bFGF/FGF2. For example, in exemplary methods, cells are cultured on day 6, day 7, day 8, and day 9 in chemically defined, serum-free endothelial medium comprising 2% B27 supplement, 10 μM RA, and 20 ng/ml bFGF/FGF2.

Preferably, hPSCs are seeded as singularized cells to attain greater uniformity of hPSC density at the initiation of BMEC differentiation. For example, hPSCs can be seeded as singularized cells at day minus 3 (“day −3”; 3 days before BMEC differentiation in the presence of a chemically defined, serum-free culture medium comprising a defined, serum-free B27 supplement) at a cell density between about 8K cells/cm² and about 200K cells/cm² (e.g., about 8 cells/cm², 10K cells/cm², 12.5K cells/cm², 20K cells/cm², 25K cells/cm², 30K cells/cm², 35K cells/cm², 50K cells/cm², 100K cells/cm², 140K cells/cm², 200K cells/cm²). Preferably, hPSCs are seeded as singularized cells at a density between about 30K cells/cm² and about 70K cells/cm². More preferably, hPSCs are seeded as singularized cells at a density of about 35K cells/cm². As demonstrated in the Example that follows, cell seeding density affects BMEC differentiation and structural organization of BMEC tight junction proteins. Without being bound by any particular theory or mechanism of action, it is believed that cell seeding density affects the capability for the endothelial progenitors to gain BMEC properties.

Useful gene expression or protein markers for identifying BMECs include, but are not limited to, CD31, Pgp, claudin-5, and occludin, BCRP1, MRP1, and combinations thereof. CD31 is an endothelial cell marker. Claudin-5 and Occludin are integral plasma-membrane proteins located at tight junctions including tight junctions between brain endothelial cells. P-glycoprotein (Pgp), Breast Cancer Resistance Protein (BCRP), and Multidrug Resistance-Associated Protein (MRP) are efflux transporters. Preferably, the method yields a cell population, at least 95% (e.g., at least 95%, 96%, 97%, 98%, 99% or more) of which are BMECs positive for expression of one or more of Pgp, occludin, and claudin-5. Molecular markers of BMECs can be detected at the mRNA expression level or protein level by standard methods in the art. In some embodiments, no cell separation step or method is used to obtain a cell population comprising at least 90% Pgp⁺ cells or at least 95% Pgp⁺ cells. In other embodiments, the proportion of BMECs in a population of cells obtained in the described methods is enriched using a cell separation, cell sorting, or enrichment method, e.g., fluorescence activated cell sorting (FACS), enzyme-linked immunosorbent assay (ELISA), magnetic beads, magnetic activated cell sorting (MACS), and combinations thereof. Preferably, FACS is used to identify and separate cells based on expression of endothelial markers appropriate for sorting other endothelial cell populations.

In some embodiments, certain BMEC functional criteria are also assessed. Such functional BMEC criteria include, without limitation, tube formation, LDL uptake, and BMEC-specific efflux transporter activities. In vitro tube formation can be assayed using an endothelial cell tube formation assay. See, for example, Jerkic et al. (2006) Cardiovasc Res 69:845-854. Efflux transporter activity can be assessed by detecting intracellular accumulation of a fluorescent transporter substrate or movement of a fluorescent transporter substrate across a confluent monolayer BMECs.

In some cases, it will be advantageous to obtain a transendothelial electrical resistance (TEER) measurement of BMECs obtained according to the methods provided herein. TEER measurements yield information regarding the integrity of a BMEC monolayer by monitoring the paracellular flux of small electrolytes. BMECs cells obtained according to the methods provided herein exhibit transendothelial electrical resistance of greater than about 300Ω×cm². In some cases, the BMECs exhibit physiologic TEER measurements (about 1000Ω×cm² to about 5000Ω×cm²). By comparison, immortalized BMECs have poor barrier properties, including low baseline transendothelial electrical resistance (TEER) and discontinuous tight junction protein expression (Weksler et al. (2005) FASEB J. 19:1872-1874; Forster et al. (2008) J. Physiol. (Lond.) 586:1937-49; Man et al. (2008) Clin. Dev. Immunol. 384982). The in vivo BBB has been measured in rats to be between 1000-3000Ω×cm² (see Butt et al. (1990) J. Physiol. 429:47-62). TEER measurements can be carried out using a voltammeter according to any appropriate protocol.

The methods provided herein produce isolated populations of pluripotent stem cell-derived BMECs, where the isolated population is a substantially pure population of BMECs. As used herein, “isolating” and “isolated” refer to separating, selecting, or enriching for a cell type of interest or subpopulation of cells from surrounding, neighboring, or contaminating cells or from cells of another type. As used herein, the term “substantially pure” refers to a population of cells that is at least about 75% (e.g., at least about 75%, 80%, 85%, 90%, 95%, 98%, 99% or more) pure, with respect to BMECs making up a total cell population. In other words, the term “substantially pure” refers to a population of BMECs of the present invention that contains fewer than about 25%, fewer than about 20%, fewer than about 10%, or fewer than about 5% of non-BMECs when directing differentiation to obtain cells of the BMEC lineage. The term “substantially pure” also refers to a population of BMECs of the present invention that contains fewer than about 20%, about 10%, or about 5% of non-BMECs in an isolated population prior to any enrichment, expansion step, or differentiation step. Typically, a population comprising BMECs obtained by the disclosed methods comprises a very high proportion of BMECs. In some embodiments, the cell population comprises about 50% to about 99% BMECs, e.g., about 52%, 55%, 67%, 70%, 72%, 75%, 80%, 85%, 90%, 95%, 98%, or another percent of BMECs from about 50% to about 99% BMECs.

As will be appreciated by those of ordinary skill in the art, Wnt/β-catenin signaling can be activated by modulating the function of one or more proteins that participate in the Wnt/β-catenin signaling pathway to increase β-catenin expression levels or activity, TCF and LEF expression levels, or β-catenin/TCF/LEF induced transcriptional activity.

In some embodiments, activation of Wnt/β-catenin signaling is achieved by inhibiting Gsk3 phosphotransferase activity or Gsk3 binding interactions. While not wishing to be bound by theory, it is believed that inhibition of Gsk3 phosphorylation of β-catenin will inhibit tonic degradation of β-catenin and thereby increase the level of β-catenin and activity to drive differentiation of pluripotent stem cells to an endodermal/mesodermal lineage. Gsk3 inhibition can be achieved in a variety of ways including, but not limited to, providing small molecules that inhibit Gsk3 phosphotransferase activity, RNA interference knockdown of Gsk3, and overexpression of dominant negative form of Gsk3. Dominant negative forms of Gsk3 are known in the art as described, e.g., in Hagen et al. (2002), J. Biol. Chem., 277(26):23330-23335, which describes a Gsk3 comprising a R96A mutation.

In some embodiments, Gsk3 is inhibited by contacting a cell with a small molecule that inhibits Gsk3 phosphotransferase activity or Gsk3 binding interactions. Suitable small molecule Gsk3 inhibitors include, but are not limited to, CHIR99021, CHIR98014, BIO-acetoxime, BIO, LiCl, SB 216763, SB 415286, AR A014418, 1-Azakenpaullone, Bis-7-indolylmaleimide, and any combinations thereof. In some embodiments, any of CHIR99021, CHIR98014, and BIO-acetoxime are used to inhibit Gsk3 in pluripotent stem cells in the differentiation methods described herein. In one embodiment, the small molecule Gsk3 inhibitor to be used is CHIR99021 at a concentration ranging from about 3 μM to about 12 μM, e.g., about 3 μM, 4 μM, 5 μM, 6 μM, 7 μM, 8 μM, 9 μM, 10 μM, 11 μM, 12 μM or another concentration of CHIR99021 from about 3 μM to about 12 μM. In another embodiment, the small molecule Gsk3 inhibitor to be used is CHIR98014 at a concentration ranging from about 0.1 μM to about 1 μM, e.g., about 0.1 μM, 0.2 μM, 0.3 μM, 0.4 μM, 0.5 μM, 0.6 μM, 0.7 μM, 0.8 μM, 0.9 μM or another concentration of CHIR98014 from about 0.1 μM to about 1 μM. In another embodiment, the small molecule Gsk3 inhibitor to be used is BIO-acetoxime at a concentration ranging from about 0.1 μM to about 1 μM, e.g., about 0.1 μM, 0.2 μM, 0.3 μM, 0.4 μM, 0.5 μM, 0.6 μM, 0.7 μM, 0.8 μM, 0.9 μM or another concentration of BIO-acetoxime from about 0.1 μM to about 1 μM.

In other embodiments, Gsk3 activity is inhibited by RNA interference knockdown of Gsk3. For example, Gsk3 expression levels can be knocked-down using commercially available siRNAs against Gsk3, e.g., SignalSilence® GSK-3α/β siRNA (catalog #6301 from Cell Signaling Technology®, Danvers, Mass.), or a retroviral vector with an inducible expression cassette for Gsk3, e.g., a commercially available Tet-inducible retroviral RNA interference (RNAi) system from Clontech (Mountain View, Calif., Catalog No. 630926), or a cumate-inducible system from Systems Biosciences, Inc. (Mountain View, Calif.), e.g., the SparQ® system, catalog no. QM200PA-2.

In other embodiments, the Wnt/β-catenin signaling pathway is activated by overexpressing β-catenin itself, e.g., human β-catenin (exemplary nucleotide and amino acid sequences are found at GenBank Accession Nos: X87838 and CAA61107.1, respectively). In one embodiment, β-catenin overexpression is achieved using an inducible expression system, e.g., any of the just-mentioned inducible expression systems. Alternatively, a constitutively active, stabilized isoform of β-catenin is used, which contains point mutations S33A, S37A, T41A, and S45A as described, e.g., in Baba et al. (2005), Immunity 23(6):599-609.

In yet other embodiments, Wnt/β-catenin signaling pathway activation in pluripotent stem cells is achieved by contacting the cells with an agent that disrupts the interaction of β-catenin with Axin, a member of the β-catenin destruction complex. Disruption of the Axin/β-catenin interaction allows β-catenin to escape degradation by the destruction complex thereby increasing the net level of β-catenin to drive β-catenin signaling. For example, the Axin/β-catenin interaction can be disrupted in pluripotent cells by contacting the cells with the compound 5-(Furan-2-yl)-N-(3-(1H-imidazol-1-yl)propyl)-1,2-oxazole-3-carboxamide (“SKL2001”), which is commercially available, e.g., as catalog no. 681667 from EMD Millipore. An effective concentration of SKL2001 to activate Wnt/β-catenin signaling ranges from about 10 μM to about 100 μM, about 20 μM, 30 μM, 40 μM, 50 μM, 60 μM, 70 μM, 80 μM, 90 μM or another concentration of SKL2001 from about 10 μM to about 100 μM.

As used herein, “pluripotent stem cells” appropriate for use according to a method of the invention are cells having the capacity to differentiate into cells of all three germ layers. Pluripotent stem cells (PSCs) suitable for the differentiation methods disclosed herein include, but are not limited to, human embryonic stem cells (hESCs), human induced pluripotent stem cells (hiPSCs), non-human primate embryonic stem cells (nhpESCs), non-human primate induced pluripotent stem cells (nhpiPSCs). As used herein, “embryonic stem cells” or “ESCs” mean a pluripotent cell or population of pluripotent cells derived from an inner cell mass of a blastocyst. See Thomson et al., Science 282:1145-1147 (1998). These cells express Oct-4, SSEA-3, SSEA-4, TRA-1-60, and TRA-1-81, and appear as compact colonies having a high nucleus to cytoplasm ratio and prominent nucleolus. ESCs are commercially available from sources such as WiCell Research Institute (Madison, Wis.).

As used herein, “induced pluripotent stem cells” or “iPS cells” mean a pluripotent cell or population of pluripotent cells that may vary with respect to their differentiated somatic cell of origin, that may vary with respect to a specific set of potency-determining factors and that may vary with respect to culture conditions used to isolate them, but nonetheless are substantially genetically identical to their respective differentiated somatic cell of origin and display characteristics similar to higher potency cells, such as ESCs, as described herein. See, e.g., Yu et al., Science 318:1917-1920 (2007). Induced pluripotent stem cells exhibit morphological properties (e.g., round shape, large nucleoli and scant cytoplasm) and growth properties (e.g., doubling time of about seventeen to eighteen hours) akin to ESCs. In addition, iPS cells express pluripotent cell-specific markers (e.g., Oct-4, SSEA-3, SSEA-4, Tra-1-60, or Tra-1-81, but not SSEA-1). Induced pluripotent stem cells, however, are not immediately derived from embryos. As used herein, “not immediately derived from embryos” means that the starting cell type for producing iPS cells is a non-embryonic, non-pluripotent cell, such as a multipotent cell or terminally differentiated cell, such as somatic cells obtained from a post-natal individual.

Human iPS cells can be used according to a method described herein to obtain BMECs having the genetic complement of a particular human subject. For example, it may be advantageous to obtain BMECs that exhibit one or more specific phenotypes associated with or resulting from a particular disease or disorder of the particular mammalian subject. In such cases, iPS cells are obtained by reprogramming a somatic cell of a particular human subject according to methods known in the art. See, for example, Yu et al., Science 324(5928):797-801 (2009); Chen et al., Nat. Methods 8(5):424-9 (2011); Ebert et al., Nature 457(7227):277-80 (2009); Howden et al., Proc. Natl. Acad. Sci. U.S.A 108(16):6537-42 (2011). Induced pluripotent stem cell-derived BMECs allow modeling of blood brain barrier formation or integrity using BMECs and other BBB cell types obtained from an individual having, for example, a particular disease.

Subject-specific somatic cells for reprogramming into iPS cells can be obtained or isolated from a target tissue of interest by biopsy or other tissue sampling methods. In some cases, subject-specific cells are manipulated in vitro prior to use. For example, subject-specific cells can be expanded, differentiated, genetically modified, contacted to polypeptides, nucleic acids, or other factors, cryo-preserved, or otherwise modified.

Chemically defined culture medium and substrate conditions for culturing pluripotent stem cells, as used in the methods described herein, are well known in the art. Preferably, a serum-free, chemically defined culture medium is used. As used herein, the terms “chemically-defined culture conditions,” “fully defined, growth factor free culture conditions,” and “fully-defined conditions” indicate that the identity and quantity of each medium ingredient is known and the identity and quantity of supportive surface is known. As used herein, “serum-free” means that a medium does not contain serum or serum replacement, or that it contains essentially no serum or serum replacement. For example, an essentially serum-free medium can contain less than about 0.5%, 0.4%, 0.3%, 0.2% or 0.1% serum.

In some embodiments, pluripotent stem cells to be differentiated according to the methods disclosed herein are cultured in the presence of a serum-free, chemically-defined culture medium such as mTESR1™ medium (StemCell Technologies, Inc., Vancouver, Calif.), or Essential 8® medium (Life Technologies, Inc.) on a Matrigel® substrate (BD Biosciences, NJ), a Synthemax® synthetic cell culture surface (Corning) according to the manufacturer's protocol, or a vitronectin-coated surface. A number of known basal culture media are suitable for use throughout the differentiation methods described herein. Such basal cell culture media include, but are not limited to, RPMI, DMEM/F12 (1:3), DMEM/F12 (1:1), DMEM/F12 (3:1), F12, DMEM, and MEM. In exemplary embodiments, these basal cell culture media are supplemented with 50 to 200 μg/ml L-Ascorbic acid 2-phosphate sesquimagnesium salt hydrate (e.g., Sigma, catalog no. A8960).

In exemplary embodiments, human pluripotent stem cells (e.g., human ESCs or iPS cells) are cultured in the absence of a feeder layer (e.g., a fibroblast layer) and in the presence of a chemically defined substrate. For example, human pluripotent cells can be cultured in the presence of a substrate comprising vitronectin, a vitronectin fragment or variant, a vitronectin peptide, a self-coating substrate such as Synthemax® (Corning), or combinations thereof. In exemplary embodiments, the chemically-defined substrate is a plate coated in vitronectin peptides or polypeptides (e.g., recombinant human vitronectin).

In another aspect, provided herein are methods for obtaining functional human BMECs, where the method comprises differentiating cells having mesoderm identity under conditions that promote differentiation of the mesoderm cells into BMECs cells. In general, such methods can use cells that express mesoderm-specific genes and proteins such as brachyury/T and PAX2, and have the following steps:

Cells expressing mesoderm-specific markers are cultured for about 5 days in the presence of a chemically defined, serum-free culture medium comprising a defined, serum-free B27 supplement, whereby cells that express endothelial progenitor marker Flk-1 are obtained. In preferred embodiments, the chemically defined, serum-free medium is DMEM/F12 supplemented with B27 (“DMEM/F12/B27”). B27 is commercially available from suppliers such as Invitrogen.

Next, the Flk-1⁺ cells are cultured for about two days in the presence of a chemically defined, serum-free endothelial medium comprising B27 supplement and retinoic acid (RA), whereby a cell population comprising human BMECs is obtained. In preferred embodiments, the chemically defined, serum-free endothelial medium is human Endothelial Serum-Free Medium (hESFM) (Invitrogen) supplemented with B27 and about 10 μM retinoic acid (RA). RA enhances the functional properties and maturation of BMECs.

It will be understood by those practioners in the art that BMECs obtained according to the methods provided herein are suitable for in vitro blood brain barrier (BBB) formation. Importantly, BMECs obtained according to the chemically defined, serum-free methods provided herein are better suited for in vitro BBB models than BMECs obtained using undefined culture systems that exhibit line-to-line variability. In some cases, an in vitro BBB is obtained by co-culturing BMECs obtained according to the methods provided herein with other cell types associated with the blood brain barrier including, without limitation, astrocytes, neurons, and pericytes. Astrocytes, neurons, and pericytes suitable for preparation of an in vitro BBB can be obtained according to chemically defined, serum-free differentiation protocols, or can be primary cells or obtained from primary cell cultures. As described in the Examples that follow, hPSC-derived BMECs can be co-cultured in vitro with human pericytes, astrocytes, and/or neurons in a medium that supports growth of endothelial cells (e.g., hECSR medium).

In a further aspect, provided herein is a method of in vitro screening of an agent. For example, provided herein are methods of using in vitro-derived BMECs for high throughput screening of candidate agents. For example, BMECs obtained as described herein can be screened to identify agents that modulate development of BBB tissue. Screening methods can comprise or consist essentially of (a) contacting a test agent to a BMEC or population of BMECs obtained as described herein; and (b) detecting an effect of the agent on the cell or cells (e.g., disrupt or otherwise alter the integrity of a BMEC monolayer). In some cases, screening methods include screening candidate compounds to identify test agents that promote the development of blood brain barrier tissue. In other cases, candidate compounds can be screened for toxicity to human BMECs or blood brain barrier tissue. In some cases, detecting comprises detecting at least one positive or negative effect of the agent on morphology or life span of cells, whereby an agent that increases or reduces the life span of the cells or has a positive or negative impact on the morphology of the cells is identified as having an effect on human BMECs or blood brain barrier tissues. In some cases, detecting comprises performing a method selected from the group consisting of TEER assays, adhesion assays, RNA sequencing, gene expression profiling, transcriptome analysis, metabolome analysis, detecting reporter or sensor, protein expression profiling, Förster resonance energy transfer (FRET), metabolic profiling, and microdialysis. The agent can be screened for an effect on gene expression, and detecting can comprise assaying for differential gene expression relative to an uncontacted cell or cell population.

In exemplary embodiments, detecting and/or measuring a positive or negative change in a level of expression of at least one gene following exposure (e.g., contacting) of a test compound to BMECs comprises whole transcriptome analysis using, for example, RNA sequencing. In such cases, gene expression is calculated using, for example, data processing software programs such as Light Cycle, RSEM (RNA-seq by Expectation-Maximization), Excel, and Prism. See Stewart et al., PLoS Comput. Biol. 9:e1002936 (2013). Where appropriate, statistical comparisons can be made using ANOVA analyses, analysis of variance with Bonferroni correction, or two-tailed Student's t-test, where values are determined to be significant at P<0.05. Any appropriate method can be used to isolate RNA or protein from neural constructs. For example, total RNA can be isolated and reverse transcribed to obtain cDNA for sequencing.

Test compounds can be dissolved in a solvent such as, for example, dimethyl sulfoxide (DMSO) prior to contacting to BMECs provided herein. In some cases, identifying agents comprises analyzing the contacted BMECs for positive or negative changes in biological activities including, without limitation, gene expression, protein expression, cell viability, and cell proliferation. For example, microarray methods can be used to analyze gene expression profiles prior to, during, or following contacting the plurality of test compounds to the BMECs. In some cases, a method of the present invention further comprises additional analyses such as metabolic assays and protein expression profiling.

Compositions

In another aspect, provided herein are preparations of BMECs. For example, provided herein are BMECs, substantially purified populations of BMECs, pharmaceutical preparations comprising BMECs, and cryopreserved preparations of the BMECs. The BMECs described herein may be substantially free of at least one protein, molecule, or other impurity that is found in its natural environment (e.g., “isolated”). The BMECs may be mammalian, including, human BMECs. The invention also provides human BMECs, a substantially purified population of human BMECs, pharmaceutical preparations comprising human BMECs, and cryopreserved preparations of the human BMECs. The preparation may be a preparation comprising human embryonic stem cell-derived BMECs, human iPS cell-derived BMECs, and substantially purified (with respect to non-BMECs) preparations comprising differentiated pluripotent stem cell-derived BMECs.

Cell preparations provided herein are useful for various in vitro and in vivo applications such as screening for drugs affecting homeostasis of the brain microenvironment, neural development, and/or the integrity of a BMEC monolayer. The disclosed methods facilitate scalable and reproducible production and use of functional BMEC populations.

Preparations comprising BMECs useful for clinical applications must be obtained in accordance with regulations imposed by governmental agencies such as the U.S. Food and Drug Administration. Accordingly, in exemplary embodiments, the methods provided herein are conducted in accordance with Good Manufacturing Practices (GMPs), Good Tissue Practices (GTPs), and Good Laboratory Practices (GLPs). Reagents comprising animal derived components are not used, and all reagents are purchased from sources that are GMP-compliant. In the context of clinical manufacturing of a cell therapy product, such as in vitro populations of human arterial endothelial cells, GTPs govern donor consent, traceability, and infectious disease screening, whereas the GMP is relevant to the facility, processes, testing, and practices to produce a consistently safe and effective product for human use. See Lu et al., Stem Cells 27: 2126-2135 (2009). Where appropriate, oversight of patient protocols by agencies and institutional panels is envisioned to ensure that informed consent is obtained; safety, bioactivity, appropriate dosage, and efficacy of products are studied in phases; results are statistically significant; and ethical guidelines are followed.

Articles of Manufacture

The invention also provides a kit for obtaining functional brain microvascular endothelial cells by differentiating human pluripotent stem cells under chemically defined culture conditions. In some cases, the kit comprises (i) a first chemically defined, serum-free culture medium suitable for differentiation of human pluripotent stem cells into cells expressing mesodermal markers; (ii) a second culture medium suitable for differentiation of pluripotent stem cell-derived mesodermal cells into cells that express endothelial progenitor marker Flk-1; (iii) a third chemically defined, serum-free endothelial medium comprising B27 supplement, bFGF/FGF2, and retinoic acid (RA); and (iv) instructions describing a method for differentiating human pluripotent stem cells into functional brain microvascular endothelial cells, the method employing the first, second, and third culture media. In some cases, the first chemically defined culture medium comprises an activator of Wnt/β-catenin signaling. In some cases, the second chemically defined culture medium comprises B27 supplement.

Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which the invention pertains. Although any methods and materials similar to or equivalent to those described herein can be used in the practice or testing of the present invention, preferred methods and materials are described herein.

In describing the embodiments and claiming the invention, the following terminology will be used in accordance with the definitions set out below.

In the specification and in the claims, the terms “including” and “comprising” are open-ended terms and should be interpreted to mean “including, but not limited to . . . .” These terms encompass the more restrictive terms “consisting essentially of” and “consisting of” As used herein and in the appended claims, the singular forms “a”, “an”, and “the” include plural reference unless the context clearly dictates otherwise. As well, the terms “a” (or “an”), “one or more” and “at least one” can be used interchangeably herein. It is also to be noted that the terms “comprising,” “including,” “characterized by,” and “having” can be used interchangeably.

As used herein, “about” means within 5% of a stated concentration range or within 5% of a stated time frame.

As used herein, “a medium consisting essentially of” means a medium that contains the specified ingredients and those that do not materially affect its basic characteristics.

The terms “defined culture medium,” “defined medium,” and the like, as used herein, indicate that the identity and quantity of each medium ingredient is known. The term “defined,” when used in relation to a culture medium or a culture condition, refers to a culture medium or a culture condition in which the nature and amounts of approximately all the components are known.

As used herein, “effective amount” means an amount of an agent sufficient to evoke a specified cellular effect according to the present invention.

Cells are “substantially free” of exogenous genetic elements or vector elements, as used herein, when they have less than 10% of the element(s), and are “essentially free” of exogenous genetic elements or vector elements when they have less than 1% of the element(s). However, even more desirable are cell populations wherein less than 0.5% or less than 0.1% of the total cell population comprise exogenous genetic elements or vector elements. A culture, composition, or culture medium is “essentially free” of certain reagents, such as signaling inhibitors, animal components or feeder cells, when the culture, composition, and medium, respectively, have a level of these reagents lower than a detectable level using conventional detection methods known to a person of ordinary skill in the art or these agents have not been extrinsically added to the culture, composition, or medium.

The invention will be more fully understood upon consideration of the following non-limiting Examples. It is specifically contemplated that the methods disclosed are suited for pluripotent stem cells generally. All publications, patents, and patent applications disclosed herein are hereby incorporated by reference as if set forth in their entirety.

EXAMPLES

Obtaining Brain Microvascular Endothelial Cells from Human Pluripotent Stem Cells Via Wnt Signaling Modulation

An intact blood-brain barrier (BBB) serves as a key interface between the blood circulation and central nervous system (CNS). The primary anatomical component of the BBB is provided by brain microvascular endothelial cells (BMECs) [1,2] that work in concert with supporting cells such as astrocytes, pericytes, and neurons to form the neurovascular unit [1,3,4]. BMECs are connected by tight junctions and display low levels of vesicular traffic, leading to extremely low vascular permeability. BMECs also express molecular influx and efflux transporters, which regulate the delivery of nutrients from blood to brain and removal of compounds from the brain, respectively. A functional BBB prevents the majority of small molecule drugs and nearly all large molecule biologics from entering the brain [5]. Thus, the BBB is a highly efficient barrier that protects the brain and limits CNS drug delivery [6]. Moreover, BBB dysfunction has been associated with many CNS disorders, including stroke [7-9], Alzheimer's disease [10,11], multiple sclerosis [12], Parkinson's disease [13], traumatic brain injury [14,15] and HIV [16-18].

Although the BBB has been extensively studied in animal models [19-21], and using in vitro models based on primary human BMECs [22,23] and immortalized human brain endothelial cell lines [2,24,25], these models lack key attributes of the human BBB. Animal models cannot fully represent the human BBB due to species differences, particularly in transporter expression and function [26]. Human primary BMECs are difficult to obtain in sufficient quantities for drug screening and disease models and cannot be readily expanded in culture. Immortalized cell lines exhibit a loss of BMEC-specific properties, including loss of tight junctions yielding sub-physiologic TEER [27]. These limitations have prevented our full understanding of human BBB development, function and disease [28].

hPSCs have the potential to generate large quantities of specialized human cells for studying development and modeling disease [29-31]. Previously, we reported generation of pure populations of hPSC-derived BMECs via co-differentiation of hPSCs to neural and endothelial progenitors followed by selective purification of the BMECs [32]. In addition, we demonstrated that retinoic acid (RA) addition during BMEC differentiation enhanced barrier properties to physiologic levels [33]. Presumably, the neural progenitors in this co-differentiation platform induce the endothelial progenitors to acquire BMEC-specific traits, which are then enhanced by RA treatment. However, the undefined nature of this co-differentiation platform complicates investigation of mechanisms that specify BMEC fates in the hPSC-derived endothelial cells. In addition, this undefined protocol can result in line-to-line and batch-to-batch variability in BMEC yield and phenotypes [32,34,35]. Other studies have also shown human BMEC-like cells can be generated from alternative stem and progenitor cell sources, including hematopoietic stem cells [36], endothelial progenitors [37], and hPSC-derived endothelial cells (ECs) co-cultured with C6 glioma cells [38]. Unfortunately, none of these prior studies report a chemically-defined, robust process for generating human BMECs exhibiting physiologic BBB phenotypes.

During embryonic development, mesoderm-derived endothelial cells form a vascular plexus covering the developing neural tube [39,40]. As nascent blood vessels enter the developing CNS, canonical Wnt signaling is necessary to induce BMEC barrier properties [41-43]. RA has also been shown to regulate BMEC specification. During BBB development, radial glial cells supply the CNS with RA [44], and this RA signaling induces barrier formation and BBB-specific gene expression [33,44,45]. In addition to Wnt regulation of BBB induction in vivo, prior studies have demonstrated that activation of canonical Wnt signaling can also direct hPSCs to mesodermal lineages in vitro [31,46-48]. Thus, we hypothesized that appropriate differentiation stage-specific modulation of canonical Wnt would induce mesodermal and endothelial commitment in hPSCs, and combine with subsequent RA signaling to drive acquisition of BMEC markers and phenotypes.

Here we report a chemically-defined method to differentiate hPSCs to BMECs via sequential Wnt and RA pathway activation. During this differentiation process, hPSCs progress through primitive streak, intermediate mesoderm, and Flk1⁺ endothelial progenitors to generate virtually pure populations of CD31⁺ endothelial cells that display key BMEC phenotypes including tight junctions, low passive permeability and polarized efflux transporters. The resultant, developmentally-relevant BMEC differentiation strategy is defined, robust, and facile.

Results

Progression of hPSC Differentiation to BMECs

Given the roles of canonical Wnt signaling in both mesoderm specification and BBB development, we first treated hPSCs with CHIR99021, a GSK-3β inhibitor and Wnt agonist, to direct hPSCs to mesoderm-derived endothelial progenitors. Prior to treatment, IMR90-4 induced pluripotent stem cells (iPSCs) were seeded on a Matrigel-coated six-well plate at a density of 35×10³ cells/cm² and expanded in an undifferentiated state for three days in mTeSR1™ (FIG. 1A). Previously, we showed that 6 μM CHIR99201 treatment induced hPSC differentiation to primitive streak in a serum-free and albumin-free medium [49]. Hence at day 0, 6 μM of CHIR was added into DeSR1 (Unconditioned medium lacking KnockOut Serum Replacement: DMEM/F12, 1% MEM-NEAA, 0.5% GlutaMAX and 0.1 mM β-mercaptoenthanol [32]) to initiate differentiation. After 24 hours, the medium was removed and cells were transitioned to DeSR2 (DeSR1 plus B27 supplement) for another five days with daily medium changes. At day 0, pluripotency was verified by OCT4, NANOG and TRA-1-60 immunostaining (FIGS. 1B-D). After 24 hr of CHIR99021 treatment, almost 100% of the cells expressed brachyury, assessed by immunostaining (FIG. 1E) and flow cytometry (FIG. 1F), indicating progression to primitive streak. In concert with brachyury expression, primitive streak genes T and MIXL1 [50] peaked at day 2 and then dramatically decreased (FIG. 5). At day 4, more than 90% of the cells expressed the intermediate mesoderm marker PAX2 (FIGS. 1G, 1H) and PAX2 expression peaked at day 6 (FIG. 5). Nearly 100% of the cells expressed the endothelial progenitor marker Flk-1 at day 5 (FIGS. 1I, 1J), while the expression level of the endothelial progenitor marker CD31 gradually increased and then diminished after day 6 (FIG. 5).

At day 6, cells were switched to hECSR1 medium (hESFM supplemented with 20 ng/ml bFGF, 10 μM RA and B27) to induce RA signaling in the hPSC-derived endothelial progenitors in an attempt to drive specification to BMECs. Cells were maintained in this medium for two days. At day 8, cells were replated onto a Matrigel-coated substrate in hECSR1 and at day 9, the medium was switched to hECSR2 (hECSR1 lacking RA and bFGF). Expression of CDH5 (VE-cadherin) was substantially induced after RA treatment (FIG. 5). Expression of tight junction-related genes TJP1, CLDN5 and OCLN and efflux transporter ABCB1 also increased during differentiation (FIG. 5). The resultant day 10 BMEC-like cells were a pure population expressing endothelial markers (CD31, VE-Cadherin), BBB glucose transporter (GLUT-1), tight junction proteins (ZO-1, claudin-5, occludin) and efflux transporters (BCRP, MRP1, Pgp) (FIGS. 2A-2I). Thus, treatment of hPSCs with CHIR99021 and RA directed hPSCs through endothelial progenitors to endothelial cells that expressed BMEC markers. We next tested whether the differentiation protocol illustrated in FIG. 1A generated cells expressing BMEC markers in additional hPSC lines, including H9 human embryonic stem cells (hESCs) and 19-9-11 iPSCs. These lines also produced cells expressing endothelial and BMEC markers, including CD31, Glut1, ZO-1, claudin-5, occludin, MRP1, BCRP1 and Pgp, at day 10 (FIG. 6).

Next, RNA sequencing was used to compare global gene expression profiles in the hPSC-derived BMECs differentiated as shown in FIG. 1A with BMECs generated from our previously reported co-differentiation system (UM, [32]) and primary human BMECs. As expected, hPSC-derived BMECs from three independent differentiations clustered closely and were similar to those generated from the undefined UM platform. Moreover, the hPSC-derived BMECs clustered with primary human BMECs and were distinct from undifferentiated hPSCs and hPSC-derived ectoderm, endoderm and mesoderm (FIG. 2J). The Pearson correlation analysis was used to evaluate the gene expression similarity between defined-BMECs and primary human BEMCs. The coefficient between defined-BMECs and primary human BMECs is 0.77 (P<0.001), which suggests a strong positive association between these two groups. We next analyzed the expression of a subset of genes that regulate key BBB attributes, including tight junctions and molecular transporters. The gene set comprises 20 tight junction related genes [1,51-54] and an unbiased list of all 25 CLDN genes, all 407 solute carrier (SLC) transporters, and all 53 ATP-binding cassette (ABC) transporters regardless of prior knowledge of BBB association (Table 2). Primary human BMECs expressed 234 of these genes. BMECs differentiated from hPSCs via the defined method expressed many of these same genes (206 of 234 (88%)) as did BMECs differentiated via the UM method (208 of 234 (89%), FIG. 2K), indicating a close similarity between human BMECs from the different sources with respect to transcripts having potential relevance to BBB function.

Initially, differentiation was performed on Matrigel®, which has been shown to support BMEC generation from hPSCs [32]. However, to remove the lot-to-lot variability inherent to Matrigel® and to fully define the differentiation platform, we explored differentiation on SyntheMax™ and recombinant human vitronectin coatings. Undifferentiated IMR90-4 iPSCs were expanded on either SyntheMax™ or vitronectin-coated surfaces for 3 days then subjected to the differentiation process shown in FIG. 1A. Cells were replated onto a human placenta-derived collagen IV/human plasma-derived fibronectin-coated surface at day 8. Immunostaining at day 10 demonstrated expression of key BMEC proteins in cells differentiated on defined matrices (FIGS. 7A-7B).

hPSC-Derived BMECs Exhibit BBB Phenotypes

In addition to examination of BMEC gene and protein expression, we also evaluated endothelial and BMEC phenotypes. After 8 days of differentiation, cells were replated onto a Matrigel®-coated surface at 1 million cells/cm² and maintained in hECSR1 medium. At day 9, culture medium was switched to hECSR2. Day 10 hPSC-derived BMECs exhibited endothelial cell properties, including expression of von Willebrand factor (vWF) (FIG. 3A), formation of tube-like structures on Matrigel® in the presence of VEGF (FIG. 3B), uptake of acetylated low-density lipoprotein (LDL) (FIG. 3C), and upregulation of ICAM-1 expression after treatment with TNF-α (FIGS. 3D-3F). BMEC efflux transporter activities were also measured at day 10. Efflux transporter accumulation assays were performed by quantifying intracellular accumulation of fluorescent substrates, including the Pgp substrate rhodamine 123, the MRP-family substrate 2′,7′-dichlorofluorescein diacetate (DCFDA) and the BCRP-family substrate Hoechst. In the presence of the transporter-specific inhibitors CsA (Pgp), MK571 (MRP), and Ko143 (BCRP), the intracellular accumulation of fluorescent substrates increased between 150% and 220%, indicating activity of each class of transporters in hPSC-derived BMECs (FIGS. 3G-3I). Next, polarization of Pgp activity was demonstrated by measuring rhodamine 123 flux across the BMEC monolayer in the presence and absence of the Pgp-specific inhibitor cyclosporine A (CsA) and in both the apical to basolateral (A-B) and basolateral to apical (B-A) directions. As shown in FIG. 3J, CsA treatment increased rhodamine 123 transport across the BMEC monolayer by 160% in the A-B direction. In contrast, CsA inhibition resulted in a 23% percent decrease in rhodamine 123 crossing the barrier in the B-A direction (indicated in FIG. 1A), indicating Pgp efflux function polarized in the B-A direction. Finally, BMECs differentiated via the defined protocol exhibited similar Pgp accumulation and transport as BMECs differentiated via our previously reported undefined co-differentiation protocol (FIGS. 7A-7B, UM protocol).

Finally, previous studies have shown that co-culturing BMECs, including those that are iPSC-derived, with neural progenitor cells, astrocytes and pericytes can enhance BBB properties such as TEER [55-59]. Day 8 iPSC-derived BMECs seeded on Transwells were maintained either as a monoculture or co-cultured with primary human pericytes for the first 24 hr followed by co-culture with hPSC EZ-sphere-derived astrocytes and neurons (1:3) [60] for 3 additional days. Maximum TEER was elevated 30% at day 2 and remained elevated throughout the duration of the experiment compared to the monoculture control (FIG. 3K).

Cell Density is Crucial for BMEC Differentiation

Cell density has been shown to be crucial for efficient hPSC differentiation to a variety of lineages, including BMECs [61-64]. Thus, in addition to the optimal initial day −3 cell seeding density employed above (35×10³ cells/cm²), we tested a range of seeding densities, from 8.8×10³ cells/cm² to 140×10³ cells/cm², to explore how density affects BMEC yield and phenotype. As shown in FIG. 4A, TEER was a strong function of seeding density, with only 35×10³ cells/cm² yielding BMECs possessing substantial barrier function at day 2 after transfer onto Transwells. The BMEC TEER peaked at 2 days after replating and plateaued above 2000 Ω·cm² through day 7 (FIG. 4B). At non-optimum seeding densities, TEER gradually increased through 6 days after replating, peaking at approximately 1000 Ω·cm². We next assessed expression of endothelial markers to investigate the endothelial specification process. Cells differentiated at all densities tested yielded endothelial cell populations with nearly 100% Flk-1 positive cells at day 5 and over 90% CD31 positive cells at day 10 (FIG. 8). This suggested that deficits in barrier function may be a result of poor BMEC specification. Thus, we assessed BMEC markers in populations differentiated at different seeding densities. Nearly 100% of cells expressed Pgp after the differentiation process at either Day 8 or Day 10 (FIG. 9). However, only cells differentiated at the optimal seeding density of 35×10³ cells/cm² yielded a pure claudin-5 expressing population with maximal claudin-5 expression (FIGS. 4C-4E). In addition to cells not expressing claudin-5, cells differentiated from non-optimal starting densities also displayed non-junctional claudin-5 (FIG. 4F, white arrows) or non-uniform claudin-5 distributions at cell junctions (FIG. 4F, red arrows). In addition, only cells differentiated from seeding densities of at least 35×10³ cells/cm² yielded a nearly pure population of occludin-expressing cells (FIGS. 4G-4I). Immunostaining analysis of occludin also showed cells differentiated from cell densities less than 35×10³ cells/cm² had large areas of cells lacking occludin expression (FIG. 4J, white arrows). Unlike Claudin-5 and occludin, seeding density did not have a significant effect on ZO-1 expression, but cells differentiated with 8.8×10³ cells/cm² showed poor ZO-1 localization (FIG. 10, red arrows). Immunostaining for additional BMEC markers also indicated poor localization of CD31, ZO-1, MRP1 and BCRP in cells differentiated at non-optimum cell density (FIG. 10, compare 35 k to other densities). H9 hESCs and 19-9-11 iPSCs differentiated at an initial seeding density of 35×10³ cells/cm² also generated BMECs TEER at or above 2000 Ω·cm² (FIG. 11). In addition, 35×10³ cells/cm² was found to be the optimal seeding density for SyntheMax™ and vitronectin substrates, with vitronectin substrates performing more closely to Matrigel® than SyntheMax™ substrates in TEER assays (FIG. 12).

RA Enhances BMEC Phenotypes

Previously, we have shown that RA induces BBB properties in hPSC-derived BMECs [33]. Other studies also have demonstrated that RA signaling regulates BBB formation and induces BBB phenotypes [44,45]. To determine the role of RA in specifying BMEC differentiation and enhancing the BMEC phenotypes described in FIGS. 2A-2K and FIGS. 3A-3K, we compared differentiation in the presence and absence of RA using the protocol illustrated in FIG. 1A. From day 6 to day 8, cells were maintained either in hECSR1 or hECSR1 lacking RA. qPCR showed that expression of tight junction related genes TJP1, CLDN5 and OCLN and efflux transporters ABCG2, ABCC1, and ABCB1 was greater (3-20-fold) in cells exposed to RA (FIG. 5A). Nearly 100% of cells expressed CD31 at day 6 and this expression was preserved in the presence of RA induction at day 8 (FIG. 5B). Immunofluorescence for CD31 and other BMEC markers for cells differentiated in the absence of RA, including VE-cadherin, Glut1 and MRP1 are shown in FIG. 13. Nearly 100% of cells differentiated in the absence and presence of RA expressed Pgp, but RA-treated cells expressed more Pgp than non-treated cells (FIG. 5C). To evaluate the barrier formation potential of the differentiated BMECs and to assess the effects of RA treatment, day 8 BMECs were replated onto Transwells and TEER measured at day 10. As shown in FIG. 5D, cells differentiated in the presence of RA exhibited physiologically relevant TEER (˜4000 Ω·cm²), while cells differentiated in the absence of RA exhibited significantly reduced barrier properties. We then investigated expression and localization of tight junction proteins. Both occludin and ZO-1 were expressed in nearly all cells at day 10 regardless of RA treatment; however, RA treatment significantly increased the expression levels of occludin and ZO-1 (FIGS. 5E, 5F). Although occludin and ZO-1 expression were lower in the absence of RA, immunostaining results indicate that nearly all the cells differentiated in the absence of RA still expressed occludin and ZO-1; however, the junctional distribution was non-uniform (FIG. 5G, indicated with red arrows and compare to FIG. 2A). In contrast to the results with occludin and ZO-1, in the absence of RA, only around 60% of the endothelial cells expressed claudin-5 compared to 100% of RA-treated cells expressing claudin-5 (FIGS. 5H, 5I). In addition, claudin-5 expression was also substantially greater in RA-treated cells (FIG. 5I). Immunostaining indicated that in the absence of RA, many of the cells did not express claudin-5 (FIG. 5J, white arrows) and those that did exhibited non-uniform junctional distribution of claudin-5 similar to that observed with occludin and ZO-1 (FIG. 5J, red arrows). Taken together, these results suggest that RA is not necessary for hPSC differentiation to endothelial cells but enhances key BMEC phenotypes in the hPSC-derived ECs, including the expression and localization of tight junction proteins that promote barrier function as measured by TEER.

Discussion

In this study, we demonstrate a robust and efficient process to differentiate hPSCs to BMECs in a defined manner. The cells progress as a homogeneous population from a pluripotent state through primitive streak, intermediate mesoderm, endothelial progenitors and eventually to endothelial cells that express many BMEC markers and exhibit BBB barrier and efflux transporter properties. More importantly, this differentiation method employs a completely defined platform, including culture medium and substrates. Defined reagents exhibit less lot-to-lot variability, leading to more robust and efficient differentiation and allowing differentiation results to be more reliable, repeatable and efficient. We have tested three different hPSC lines with this differentiation protocol and all these lines were able to differentiate into pure populations of BMEC with definitive BMEC properties at various cell densities.

In vivo, endothelial cells that form the BBB originate from mesoderm progenitors located outside the CNS [65]. In contrast to previous BMEC differentiation protocols [32,36] that rely on co-culture of endothelial progenitors with pericytes, astrocytes or differentiating neural cells, this differentiation strategy instead relies on sequential Wnt and RA signaling activation to first specify endothelial cells and then enhance BMEC properties, respectively. First, activation of canonical Wnt signaling by CHIR99201 addition directs hPSCs to Brachyury-positive primitive streak cells that then differentiate to PAX2-positive intermediate mesoderm and EC progenitors when cultured at the appropriate density in DeSR2 medium. Next, RA treatment for two days helps drive these endothelial progenitor cells to express key BMEC markers and exhibit BMEC-specific properties, including high TEER and efflux transporter activity. Our experiments showed that while RA was not necessary to obtain ECs, RA treatment significantly increased BBB properties such as TEER. The TEER enhancement correlated with increased expression and improved localization of tight junction proteins occludin and claudin-5. These findings are similar to those results observed after RA treatment of hPSC-derived BMECs generated by co-differentiation with neural cells using our previously reported protocol [33], in addition to those studies that have explored the barrier enhancing effects of astrocyte or neuron co-culture with hPSC-derived BMECs [58,59].

Previously, we have shown cell seeding density can affect BMEC differentiation from hPSCs using the neural co-differentiation protocol [64]. Other studies have also demonstrated a major role for cell seeding density in the hPSC differentiation [66-68]. An initial cell seeding density of about 35×10³ cells/cm² at day −3 is necessary to yield homogeneous populations of BMECs with high expression and proper localization of key BBB proteins, in turn leading to optimal barrier properties. In addition, this optimum seeding density translated to multiple hPSC lines and to differentiation on defined matrices. Interestingly, cells differentiated at non-optimal seeding densities expressed BMEC markers but exhibited a reduced TEER, likely resulting from diminished claudin-5 and occludin expression and improper junctional localization. Thus, RA signaling and cell density similarly regulate the capability for the endothelial progenitors to gain BMEC properties and this interplay is a target for future study.

Co-culturing hPSC-derived BMECs with pericytes, astrocytes and neurons further elevated TEER, consistent with previous studies that showed co-culturing BMECs with these neural cells can enhance BBB properties [55,56,69-71]. These data suggest that it will be possible to integrate these defined hPSC-derived BMECs with other cells of the neurovascular unit to create an isogenic patient-derived model which can be used to study the role of neurovascular unit in human neurological diseases [59]. Additionally, this method has the potential to be a powerful and robust tool for pre-clinical studies of pharmaceutical transport through the BBB.

Methods and Materials

hPSC Culture and Differentiation:

hiPSCs (iPS(IMR90)-4 and iPS-DF 19-9-11T (Yu et al., Science 2007, 318:1917-1920)), hESCs (H9) (Thomson et al., Science 1998, 282:1145-1147) were maintained on Matrigel® (Corning)-coated surfaces in mTeSR1™ (STEMCELL Technologies) as previously described (Ludwig et al., Nature methods 2006, 3:637-646). Before differentiation, hPSCs were singularized with Accutase™ (Innovative Cell Technologies) and plated onto Matrigel®-coated plates at the density between 4×10⁴ cells/cm² and 7×10⁴ cells/cm² supplemented with 10 μM ROCK inhibitor Y-27632 (Selleckchem) in mTeSR1™. hPSCs were maintained in mTeSR1™ for three days. To initiate differentiation at day 0, cells were treated with 6 μM CHIR 99021 (Selleckchem) in DMEM/F12 based serum free medium 1 (DeSR1): DMEM/Ham's F12 (ThermoFisher), 100×MEM nonessential amino acids (ThermoFisher), 100× GlutaMAX (ThermoFisher), and 0.1 mM β-mercaptoethanol (Sigma). After 24 hours, medium was changed to DMEM/F12 based serum free medium 2 (“DeSR2” which is DeSR1 plus B27 Supplement (50×) (ThermoFisher)) every day for another five days. At day 6, medium was switched to hECSR1: human Endothelial Serum-Free Medium (hESFM) (ThermoFisher) supplemented with 20 ng/ml bFGF, 10 μM retinoic acid (RA), and B27 Supplement (50×) (ThermoFisher). After 2 days of culture in hECSR1 medium, day 8 cells were dissociated with Accutase™ and plated at 1×10⁶ cells/cm² in hESCR1 onto 48-well tissue culture plates or 1.12 cm² Transwell®-Clear permeable inserts (0.4 μm pore size) coated with 100 μg/ml Matrigel®. At day 10, medium was changed to hECSR2 (hECSR1 without RA or bFGF) for longer term maintenance.

Immunochemistry:

Cells were rinsed with ice-cold phosphate buffered saline (PBS) once and followed by fixation either with ice-cold methanol or 4% paraformaldehyde (PFA) for 15 minutes. Cells were then blocked with 10% goat serum presented with 0.3% Triton-X 100 in PBS for 30 min (“10% PBSGT”). Primary antibodies were incubated with 10% PBSGT either at 4° C. overnight or at room temperature for 2 hours. After three PBS washes, cells were incubated with secondary antibodies in 10% PBGST (goat anti-rabbit Alexa Fluor® 594 and goat anti-mouse Alexa Fluor® 488; 1:200) for 1 hour at room temperature. Cells were then washed with PBS three times followed by nuclei labelling with anti-photobleaching medium DAPI fluoromount-G (Southern Biotech) and visualized.

Flow Cytometry:

Cells were dissociated with Accutase™ and fixed in 1% PFA for 15 min at room temperature, then washed with 0.5% BSA (Bio-Rad) plus 0.1% Triton-X100 three times. Cells were stained with primary and secondary antibodies diluted in 0.5% BSA plus 0.1% Triton-X 100 as described (Lian et al., Proceedings of the National Academy of Sciences 2012, 109:E1848-E1857). Data were collected on a FACSCaliber flow cytometer (Beckton Dickinson) and analyzed using FlowJo. Corresponding isotype antibodies were used as FACS gating control. Antibodies used in this study are listed in Table 2.

Quantitative RT-PCR:

Total RNA was extracted with the RNeasy mini kit (QIAGEN) and treated with DNase (QIAGEN). 1 μg total RNA was reverse transcribed into cDNA via Oligo (dT) with Superscript III Reverse Transcriptase (Invitrogen). Real-time quantitative PCR was done in triplicate with iQSYBR Green™ SuperMix (Bio-Rad). GAPDH was used as an endogenous housekeeping control. All the primers were validated and primer sequences are provided in Table 1.

TABLE 1 Primer Sequences Gene Primer Product SEQ ID name length length NO: GAPDH 207 Forward CTGATTTGGTCGTATTGGGC 20 1 Reverse TGGAAGATGGTGATGGGATT 20 2 SLC2A1 140 Forward AACTCTTCAGCCAGGGTCCAC 21 3 Reverse CACAGTGAAGATGATGAAGAC 21 4 ABCB1 207 Forward CTCATCGTTTGTCTACAGTTCG 22 5 Reverse AAGACATTTCCAAGGCATCA 20 6 PECAM1 117 Forward GAGTATTACTGCACAGCCTTCA 22 7 Reverse AACCACTGCAATAAGTCCTTTC 22 8 OCLN 132 Forward GACTTCAGGCAGCCTCGTTAC 21 9 Reverse GCCAGTTGTGTAGTCTGTCTCA 22 10 CLDN5 238 Forward GTTCGCCAACATTGTCGTCC 20 11 Reverse GTAGTTCTTCTTGTCGTAGTCGC 23 12 TJP1 128 Forward ACCAGTAAGTCGTCCTGATCC 21 13 Reverse TCGGCCAAATCTTCTCACTCC 21 14 CDH5 179 Forward AAGCGTGAGTCGCAAGAATG 20 15 Reverse TCTCCAGGTTTTCGCCAGTG 20 16 KDR 124 Forward GTGATCGGAAATGACACTGGAG 22 17 Reverse CATGTTGGTCACTAACAGAAGCA 23 18 CD34 185 Forward CTACAACACCTAGTACCCTTGGA 23 19 Reverse GGTGAACACTGTGCTGATTACA 22 20 OCT4 120 Forward GTGGAGGAAGCTGACAACAA 20 21 Reverse ATTCTCCAGGTTGCCTCTCA 20 22 Nanog 116 Forward TTTGTGGGCCTGAAGAAAACT 21 23 Reverse AGGGCTGTCCTGAATAAGCAG 21 24 Brachyury 143 Forward GGGAGCGAGGAGGAAGGGAA 20 25 Reverse TGGTGACGGTGCTGAAGTGC 20 26 MIXL1 130 Forward GGCGTCAGAGTGGGAAATCC 20 27 Reverse GGCAGGCAGTTCACATCTACC 21 28 PAX2  92 Forward TCAAGTCGAGTCTATCTGCATCC 23 29 Reverse CATGTCACGACCAGTCACAAC 21 30

TABLE 2 Antibodies Used in This Study Antibody Vendor Cat. NO. Fixation Dilution Buffer Brachyury R&D AF2085 4% PFA 1:100 IF  1% BSA PAX2 Santa Cruz sc-377181 4% PFA 1:200 IF 10% PBSG CD31 ThermoFisher RB-10333-P1 MeOH 1:25 IF 10% PBSG VE-cadherin Santa Cruz BV9 MeOH 1:50 IF 10% PBSG vWF Dako A008202-5 4% PFA 1:500 IF 10% PBSG KDR Santa Cruz sc-6251 4% PFA 1:200 IF 10% PBSG Claudin5 Invitrogen 4C3C2 MeOH 1:200 IF 10% PBSG Occludin Invitrogen OC-3F10 MeOH 1:50 IF 10% PBSG ZO-1 Invitrogen 402200 MeOH 1:200 IF 10% PBSG GLUT1 Thermo SPM498 MeOH 1:100 IF 10% PBSG PGP ThermoFisher p170 (F4) MeOH 1:25 IF 10% PBSG BCRP Millipore MAB4155 4% PFA 1:25 IF 10% PBSG MRP1 Millipore MAB4100 MeOH 1:50 IF 10% PBSG OCT3/4 Santa Cruz sc-5279 4% PFA 1:100 IF 10% PBSG TRA-1-60 Santa Cruz sc-21705 4% PFA 1:100 IF 10% PBSG NANOG Santa Cruz sc-374001 4% PFA 1:100 IF 10% PBSG ICAM-1 R&D BBA3 4% PFA 1:100 IF 10% PBSG

LDL Uptake Assay:

Differentiated BMECs at day 10 were analyzed using a LDL Uptake Assay Kit™ (Abeam). Culture medium was aspirated and replaced with LDL-Dylight™ 550 working solution. Cells were then incubated for 3 hours at 37° C. followed by three washes with PBS and visualized under the microscope with the excitation and emission wavelength at 540 nm and 570 nm, respectively. After visualization, cells were fixed with cell-based Fixative Solution for 10 minutes. Cells were then washed with TBS plus 0.1% Triton-X 100 for five minutes, each followed by 30 min blocking with Cell Based Assay Blocking Solution. Cells were then stained with Rabbit Anti-LDL receptor Primary Antibody and DyLight-488™ Conjugated Secondary Antibody. Images were taken with a fluorescent microscope with excitation and emission wavelengths of 485 nm and 535 nm, respectively.

Efflux Accumulation and Transport Assay:

P-glycoprotein (Pgp), Breast Cancer Resistance Protein (BCRP), and Multidrug Resistance-Associated Protein (MRP) functionality were assessed by intracellular accumulation of fluorescent transporter substrates and transport of fluorescent substrate across BMEC monolayers. 10 μM Rhodamine 123 (Sigma), 20 μM Hoechst (ThermoFisher) and 10 μM 2′,7′-dichlorofluorescein diacetate (DCFDA; Life Technologies) were used as the specific substrates for Pgp, BCRP1, and MRP1, respectively. BMECs at day 10 were pre-treated for 1 hour with or without specific transporter inhibitors (10 μM cyclosporin A (Pgp inhibitor), 10 μM Ko143 (BCRP inhibitor) (Sigma) and 1 μM MK571 (MRP inhibitor) (Sigma) in Hank's Balanced Salt Solution (HBSS). Cells were then treated with transporter substrates in HBSS and incubated for one hour at 37° C. on an orbital shaker. Cells were washed with PBS three times and then lysed with radioimmunoprecipitation assay buffer (RIPA buffer) (Pierce Biotechnology). Fluorescence intensity was measured on a plate reader (485 nm excitation and 530 nm emission for Rhodamine 123 and DCFDA, 360 nm excitation and 497 nm emission for Hoechst). Fluorescence intensity was subsequently normalized to cell number determined using a hemacytometer.

Endothelial Cell Tube Formation:

Each well of a 24-well tissue culture plate was coated with 300 μL of 10 mg/L Matrigel®. BMECs at day 10 were dissociated with Accutase™ and plated in hECSM1 plus 50 ng/mL VEGF without RA or bFGF at 2×10⁵ cells/well. Phase contrast images were acquired after 24 hours.

RNA Sequencing and Data Analysis:

Total RNA of day 10 IMR90-4 iPSC-derived BMECs and primary human brain microvascular endothelial cells (Cell Systems, ACBRI 376) were prepared with the Direct-Zol™ RNA MiniPrep Plus kit (Zymo Research) according to the manufacturer's instructions. Samples were sequenced on an Illumina HiSeq2500 at the University of Wisconsin-Madison Biotechnology Center. The resulting sequence reads were mapped to the human genome (hg19) using HISAT49, and the RefSeq transcript levels (FPKMs) were quantified using the Python script rpkmforgenes.py50. A hierarchical clustering of whole transcripts was performed using GENE-E on the log 2 transformed gene counts. Distances were computed using one minus pearson correlation with average linkage. Fastq files of hPSCs (Dye et al., Elife 2015, 4:e05098; Tadeu et al., PloS one 2015, 10:e0122493; Prasain et al., Nature biotechnology 2014, 32:1151-1157), hPSC-derived ectoderm (Tadeu et al., PloS one 2015, 10:e0122493), endoderm (Dye et al., Elife 2015, 4:e05098), mesoderm (Prasain et al., Nature biotechnology 2014, 32:1151-1157) were downloaded from GEO or ArrayExpress (available at ebi.ac.uk/arrayexpress/ on the World Wide Web). The expression of a subset of genes that regulate key BBB attributes, including tight junctions and molecular transporters was analyzed. The gene set comprises 20 tight junction related genes (Bauer et al., Frontiers in neuroscience 2014, 8:392; Geier et al., Clinical Pharmacology & Therapeutics 2013, 94:636-639; Huntley et al., Frontiers in neuroscience 2014, 8:355; Liebner et al., International Journal of Developmental Biology 2011, 55:467-476; Obermeier et al., Nature medicine 2013, 19:1584-1596) and an unbiased list of all 25 CLDN genes, all 407 solute carrier (SLC) transporters, and all 53 ATP-binding cassette (ABC) transporters regardless of prior knowledge of BBB association (Table 3). Transcript levels (FPKMs) were set at a threshold >1 FPKMs, which indicates moderate expression (Schultz et al., Bioinformatics 2012, 28:1086-1092). Primary human BMECs were used to screen out the BBB-related genes from that gene list with the threshold >1FPKMs.

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The present invention has been presented by way of illustration and is not intended to be limited to the disclosed embodiments. Accordingly, those skilled in the art will realize that the invention is intended to encompass all modifications and alternative arrangements within the spirit and scope of the invention as set forth in the appended claims.

TABLE 3 Gene list #506 BBB 234 gene 234 gene DF- 234 gene UM- gene list list hBMECs list BMECs list BMECs ABCA11 CAV1 923.7407 SLC2A3 252.0928 SLC2A3 610.8353 ABCC7 ICAM2 278.3834 SLC25A6 213.1756 HIF1A 151.1465 SLC25A9 MCAM 274.1456 SLC25A5 186.9119 SLC25A5 142.1456 SLC42A3 HIF1A 249.6294 SLC25A3 157.2549 SLC25A3 138.6716 SLC24A6 CDH5 234.3097 SLC16A1 143.3172 SLC2A14 123.62 SLC9A11 PECAM1 203.7012 HIF1A 122.4893 SLC38A1 105.316 CAV1 SLC25A3 183.5255 SLC2A1 93.9611 SLC38A2 100.156 ICAM2 SLC25A5 165.756 SLC38A1 92.72981 SLC16A1 90.03843 MCAM CLDN11 136.989 SLC38A2 81.24737 SLC25A6 87.75701 HIF1A SLC38A2 136.0453 SLC44A2 67.27332 F11R 74.97036 CDH5 CAV2 106.9793 SLC25A13 61.07322 SLC3A2 71.89055 PECAM1 FLT1 105.9402 TJP1 56.69343 TJP1 71.70241 SLC25A3 SLC29A1 90.7043 ABCE1 56.32067 SLC2A1 70.75552 SLC25A5 ABCE1 86.04381 SLC3A2 56.19216 CLDN10 68.96303 CLDN11 SLC38A1 82.47343 SLC2A14 56.11487 SLC44A2 68.81839 SLC38A2 TJP1 76.45356 F11R 55.14908 SLC7A5 63.41564 CAV2 SLC43A3 74.88526 SLC1A5 53.58474 SLC39A1 53.76249 FLT1 VWF 73.26097 SLC25A39 52.78089 SLC25A13 52.07851 SLC29A1 SLC16A1 68.35225 SLC39A1 51.60302 SLC39A10 51.38782 ABCE1 TJP2 67.96791 TJP2 49.49886 TJP2 50.06371 SLC38A1 SLC20A1 62.491 SLC39A10 48.06552 ABCE1 45.28388 TJP1 SLC7A11 60.69881 SLC30A9 46.72972 SLC30A9 44.90368 SLC43A3 F11R 57.99209 CLDN7 44.32662 SLC35F2 40.78186 VWF SLC25A6 57.5346 SLC29A1 44.28459 SLC39A6 40.62602 SLC16A1 JAM3 54.89288 SLC9A3R1 41.81585 CLDND1 38.92117 TJP2 SLC3A2 50.75996 SLC39A6 37.77367 SLC25A23 37.91454 SLC20A1 SLC35F2 46.47151 SLC35F2 35.70086 SLC25A39 35.84938 SLC7A11 SLC4A7 43.35404 CLDND1 33.66144 SLC9A3R1 33.92086 F11R SLC39A1 42.83734 SLC25A1 33.53528 CLDN7 33.84267 SLC25A6 SLC25A24 41.87745 SLC7A5 33.22988 SLC25A24 29.86583 JAM3 SLC35B1 34.06834 SLC25A36 28.83266 SLC1A5 28.91319 SLC3A2 SLC30A9 33.06038 ABCD3 28.48802 SLC35D2 28.25116 SLC35F2 CLDND1 32.75058 CDH5 28.00627 SLC29A1 25.86402 SLC4A7 SLC39A9 31.23809 CLDN10 26.98014 SLC9A7 25.72785 SLC39A1 SLC39A10 30.98473 SLC25A24 26.75072 SLC35B2 24.7002 SLC25A24 SLC4A1AP 28.62383 SLC5A6 26.0891 SLC11A2 24.61003 SLC35B1 ABCF2 24.58603 SLC39A8 24.77252 SLC20A1 24.17319 SLC30A9 SLC25A51 24.22399 SLC4A7 23.76598 SLC5A6 23.3824 CLDND1 SLC25A46 24.21591 SLC5A3 23.47273 SLC25A36 23.11703 SLC39A9 SLC44A2 23.91665 SLC37A4 22.58407 SLC48A1 22.83945 SLC39A10 SLC25A32 23.63031 SLC11A2 21.88627 SLC50A1 22.61239 SLC4A1AP SLC25A39 22.65866 SLC39A9 21.62626 SLC25A1 22.59764 ABCF2 SLC1A1 20.44956 SLC25A23 20.90531 SLC39A9 22.25151 SLC25A51 SLC11A2 19.93301 SLC35A4 20.18808 SLC35B1 21.83007 SLC25A46 SLC1A5 19.51665 SLC7A2 19.87333 ABCD3 21.43351 SLC44A2 SLC39A14 18.42165 SLC35D2 19.66506 SLC38A9 20.73522 SLC25A32 SLC25A44 17.91983 SLC25A11 19.64424 SLC2A12 20.53667 SLC25A39 SLC35B2 17.85137 SLC25A46 19.4795 SLC35A4 20.20352 SLC1A1 SLC44A1 15.89151 SLC35B2 18.90054 SLC25A46 19.9377 SLC11A2 SLC50A1 15.65628 CLDN12 18.12411 SLC4A7 19.62326 SLC1A5 SLC33A1 15.40879 SLC6A6 17.64542 ABCF2 19.54797 SLC39A14 SLC35F5 15.4087 SLC20A1 17.32783 SLC44A1 18.02392 SLC25A44 SLC2A3 15.20934 SLC44A1 17.26487 SLC25A11 17.19072 SLC35B2 SLC35A5 15.09354 SLC35E2B 17.26174 OCLN 16.99925 SLC44A1 SLC35D2 14.85562 SLC35B1 16.91038 SLC4A1AP 16.98139 SLC50A1 SLC30A5 14.43843 SLC9A7 16.41598 SLC25A14 16.88279 SLC33A1 SLC30A7 14.2732 ABCF2 16.39811 SLC35A2 16.35939 SLC35F5 SLC7A6 14.19045 ABCB7 15.97855 SLC35E2B 16.35016 SLC2A3 SLC12A2 13.96953 OCLN 15.75396 SLC6A6 16.11681 SLC35A5 ABCD3 13.81484 SLC25A38 15.40118 SLC37A3 15.21492 SLC35D2 SLC35A4 13.62119 SLC50A1 15.23794 ABCB7 15.0576 SLC30A5 SLC37A3 13.46261 SLC35A1 15.04173 SLC5A3 14.85095 SLC30A7 SLC25A23 13.33278 SLC35A5 14.90034 SLC39A8 14.82668 SLC7A6 SLC7A1 13.25892 SLC16A3 14.71892 SLC30A6 14.6869 SLC12A2 ABCB7 13.12365 SLC35A2 14.65579 CAV1 14.52592 ABCD3 SLC31A1 12.37542 SLC25A17 14.35371 MCAM 14.49007 SLC35A4 SLC35F6 12.24834 SLC4A1AP 14.30081 SLC25A38 14.20695 SLC37A3 SLC12A6 12.19731 SLC35B4 14.16154 SLC25A17 13.24071 SLC25A23 ABCC4 11.77731 SLC37A3 13.93202 SLC7A6 13.04645 SLC7A1 SLC6A6 11.43204 SLC39A14 13.38355 SLC31A1 12.83048 ABCB7 SLC25A20 11.31557 SLC19A2 13.18775 CLDN12 12.82142 SLC31A1 SLC35A1 11.20306 SLC41A3 12.72882 SLC43A3 12.7829 SLC35F6 SLC41A3 10.98087 SLC38A10 12.62832 SLC35A1 12.16555 SLC12A6 ABCC1 10.95128 SLC35C2 12.13298 SLC35E2 12.16248 ABCC4 SLC40A1 10.8633 SLC25A29 12.07869 SLC37A4 12.08897 SLC6A6 SLC25A36 10.83388 ABCA1 11.91767 SLC41A3 12.01466 SLC25A20 SLC25A13 10.77849 SLC10A7 11.5767 SLC25A44 11.94043 SLC35A1 SLC25A37 10.65943 SLC30A6 11.57144 ABCF3 11.85583 SLC41A3 SLC17A5 10.53626 ABCG2 11.55531 SLC12A4 11.74317 ABCC1 SLC25A38 10.31958 SLC35F5 11.48433 ABCC5 11.71671 SLC40A1 SLC23A2 10.23087 SLC18B1 11.47867 SLC35E1 11.66272 SLC25A36 SLC9A3R2 9.998613 SLC9A6 11.40468 SLC12A2 11.3905 SLC25A13 SLC46A3 9.908212 SLC7A6OS 11.39558 SLC35B4 11.3725 SLC25A37 SLC18B1 9.879486 SLC38A9 11.21661 SLC35A5 11.30591 SLC17A5 SLC25A11 9.742069 SLC33A1 10.70683 ABCA1 11.03958 SLC25A38 SLC38A6 9.526767 ABCF3 10.66462 SLC25A32 10.88902 SLC23A2 SLC25A43 9.417356 SLC25A51 10.64999 SLC9A6 10.85257 SLC9A3R2 SLC30A6 9.213449 SLC35E2 10.26557 SLC35F5 10.72137 SLC46A3 SLC26A2 9.058527 SLC35E1 10.2129 JAM3 10.65142 SLC18B1 SLC10A7 8.942612 SLC12A4 9.863589 SLC7A2 10.49417 SLC25A11 SLC7A6OS 8.820074 SLC31A1 9.823099 SLC30A5 10.2489 SLC38A6 SLC35B3 8.76971 SLC4A2 9.775447 SLC19A2 10.22101 SLC25A43 SLC30A1 8.588276 SLC25A40 9.707604 ABCC1 10.11523 SLC30A6 ABCG2 8.238564 SLC23A2 9.34232 SLC39A14 10.04289 SLC26A2 SLC39A6 8.167096 ABCC5 9.335807 SLC25A51 9.995096 SLC10A7 SLC5A6 7.967356 SLC25A44 9.335145 SLC20A2 9.892753 SLC7A6OS SLC25A30 7.889163 SLC20A2 9.178483 ABCG2 9.820886 SLC35B3 SLC35E2 7.855851 SLC16A9 9.121988 SLC25A37 9.197012 SLC30A1 ABCB10 7.797414 CAV1 8.869287 SLC35F6 9.093918 ABCG2 SLC38A9 7.697407 SLC43A3 8.600246 SLC33A1 8.823266 SLC39A6 SLC25A40 7.663975 SLC41A1 8.580978 SLC30A7 8.81682 SLC5A6 ABCF3 7.630236 SLC25A32 8.390015 SLC25A40 8.7024 SLC25A30 SLC35E1 7.556514 SLC25A37 8.388699 CDH5 8.69502 SLC35E2 SLC25A1 7.525357 JAM3 8.364314 SLC4A2 8.643693 ABCB10 SLC25A16 7.489493 SLC7A5P2 8.252218 SLC7A1 8.608181 SLC38A9 SLC6A8 7.323966 SLC36A4 8.231476 SLC12A6 8.571138 SLC25A40 SLC9B2 7.128162 ABCC1 8.111134 SLC39A11 8.513285 ABCF3 SLC41A1 6.930944 SLC30A5 8.007126 SLC23A2 8.253028 SLC35E1 SLC37A4 6.858014 SLC39A11 7.726905 SLC35B3 8.055638 SLC25A1 SLC15A4 6.853793 SLC25A14 7.713775 SLC16A9 8.046499 SLC25A16 CLDN14 6.841163 SLC18A2 7.713735 ABCD4 7.969777 SLC6A8 SLC25A12 6.82804 SLC12A2 7.700731 SLC7A6OS 7.959892 SLC9B2 SLC48A1 6.787476 SLC7A6 7.455157 SLC35C2 7.733024 SLC41A1 SLC25A28 6.720037 ABCC4 7.441502 SLC40A1 7.668746 SLC37A4 SLC25A52 6.667478 SLC40A1 7.327833 SLC36A4 7.60958 SLC15A4 SLC2A1 6.404123 SLC52A2 7.315052 SLC25A28 7.353667 CLDN14 SLC25A17 6.374539 SLC48A1 7.237134 SLC38A7 7.330979 SLC25A12 SLC45A3 6.179573 SLC35B3 7.148587 SLC41A1 7.329091 SLC48A1 SLC25A14 6.176458 SLC35F6 7.063546 SLC16A4 7.285852 SLC25A28 SLC7A7 6.056539 SLC30A7 6.950792 SLC25A15 7.018179 SLC25A52 ABCA3 6.041755 SLC12A6 6.870094 SLC37A1 6.981045 SLC2A1 SLC35A3 5.97345 SLC2A12 6.822289 SLC38A10 6.795447 SLC25A17 SLC35C2 5.886805 SLC25A4 6.80334 CAV2 6.763466 SLC45A3 SLC9A1 5.774904 SLC16A2 6.771058 SLC18B1 6.680213 SLC25A14 SLC35E2B 5.77416 SLC2A4RG 6.751262 SLC7A5P2 6.638324 SLC7A7 SLC35B4 5.684548 SLC35A3 6.730863 SLC16A2 6.366558 ABCA3 ABCD4 5.651213 ABCB10 6.690164 SLC18A2 6.316656 SLC35A3 SLC35G2 5.574308 SLC25A28 6.663808 SLC25A4 6.252142 SLC35C2 SLC38A7 5.42276 SLC10A3 6.629065 CLDN11 6.212397 SLC9A1 SLC5A3 5.388036 SLC25A15 6.429072 SLC24A1 6.16772 SLC35E2B SLC39A13 5.291944 SLC37A1 6.369922 SLC52A2 6.15893 SLC35B4 SLC41A2 5.17794 ABCD4 6.305381 SLC25A20 5.875959 ABCD4 ABCA6 5.101244 SLC25A26 6.26727 SLC25A33 5.870099 SLC35G2 SLC9A6 5.032552 SLC7A1 6.19808 SLC10A7 5.844128 SLC38A7 SLC20A2 4.791322 SLC2A8 6.087815 SLC30A1 5.82388 SLC5A3 SLC12A4 4.7702 SLC16A4 5.860985 SLC25A29 5.624951 SLC39A13 SLC25A4 4.728352 SLC2A13 5.773666 SLC35E3 5.548845 SLC41A2 SLC4A2 4.708312 SLC24A1 5.706535 SLC35A3 5.367006 ABCA6 CLDN7 4.651275 SLC17A5 5.640505 SLC10A3 5.354412 SLC9A6 SLC8B1 4.624652 SLC39A3 5.478398 SLC44A5 5.338708 SLC20A2 SLC9A3R1 4.624386 SLC35E3 5.367367 SLC7A7 5.146036 SLC12A4 SLC35E3 4.560941 SLC38A7 5.275521 ABCC4 5.110034 SLC25A4 SLC36A4 4.524488 SLC30A4 5.206057 SLC25A16 5.091252 SLC4A2 SLC4A8 4.492913 SLC25A33 5.145579 SLC16A3 5.054938 CLDN7 SLC18A2 4.410194 SLC27A4 4.704437 SLC6A15 4.943508 SLC8B1 SLC16A3 4.18688 SLC25A19 4.699116 SLC26A6 4.881237 SLC9A3R1 SLC7A11-AS1 4.169528 SLC26A6 4.556017 SLC17A5 4.600665 SLC35E3 SLC38A10 4.141603 SLC30A1 4.530791 SLC30A4 4.521532 SLC36A4 SLC39A8 4.105094 MCAM 4.207526 SLC9A1 4.286968 SLC4A8 SLC24A1 4.090698 SLC7A7 4.204975 SLC22A23 4.188286 SLC18A2 SLC35A2 4.080426 SLC1A1 4.184253 SLC25A26 4.108745 SLC16A3 SLC9A7 3.991476 SLC38A6 4.177333 SLC25A12 4.009335 SLC7A11-AS1 SLC1A4 3.876767 SLC27A3 4.125926 SLC35D1 3.982762 SLC38A10 SLC25A15 3.823741 SLC25A16 3.98039 ABCC10 3.951296 SLC39A8 ABCC5 3.799949 SLC25A20 3.973409 SLC2A4RG 3.685668 SLC24A1 SLC25A33 3.663425 SLC44A5 3.923323 SLC38A6 3.67615 SLC35A2 SLC25A19 3.649016 SLC4A8 3.868711 SLC2A8 3.626527 SLC9A7 SLC43A1 3.605161 ABCC10 3.728089 SLC6A8 3.567135 SLC1A4 SLC25A29 3.500198 SLC39A13 3.712465 ABCB10 3.541202 SLC25A15 SLC7A5 3.422199 SLC12A9 3.497827 SLC1A4 3.520103 ABCC5 ABCB6 3.293545 SLC2A11 3.491258 SLC39A3 3.469696 SLC25A33 ABCA5 3.242039 SLC7A11 3.46873 ABCA11P 3.413526 SLC25A19 SLC6A15 3.200893 SLC9A8 3.439343 SLC26A2 3.382889 SLC43A1 SLC2A10 3.189633 SLC26A2 3.346508 SLC27A4 3.379123 SLC25A29 SLC10A3 3.187604 SLC19A1 3.325034 SLC4A8 3.300027 SLC7A5 CLDN12 3.170898 SLC6A15 3.323116 SLC2A13 3.26573 ABCB6 CLDN5 3.144691 SLC22A23 3.075992 SLC41A2 3.226567 ABCA5 SLC16A2 3.015845 SLC16A5 3.073074 SLC26A11 3.032897 SLC6A15 SLC26A6 2.928897 SLC36A1 3.061966 SLC25A30 3.023375 SLC2A10 ABCG1 2.899549 SLC35G1 3.047712 SLC2A10 3.000119 SLC10A3 SLC19A2 2.873943 SLC25A25 3.024935 SLC35G1 2.911678 CLDN12 SLC25A25 2.813299 SLC25A27 2.911114 SLC1A1 2.888386 CLDN5 SLC25A26 2.807377 ABCB6 2.894889 FLT1 2.871825 SLC16A2 SLC35E4 2.807377 SLC9A1 2.870754 SLC25A19 2.798569 SLC26A6 SLC47A1 2.798204 SLC26A11 2.835428 SLC35G2 2.701656 ABCG1 SLC36A1 2.78136 SLC25A30 2.820294 SLC25A43 2.497151 SLC19A2 ABCC5-AS1 2.717161 SLC25A12 2.773978 SLC9B2 2.457178 SLC25A25 SLC27A4 2.71138 SLC12A7 2.681496 SLC2A11 2.416716 SLC25A26 SLC35D1 2.643386 SLC25A43 2.6356 SLC16A5 2.402106 SLC35E4 SLC16A7 2.565574 SLC25A21- 2.63491 SLC7A11 2.338561 AS1 SLC47A1 SLC2A14 2.492277 SLC6A8 2.617316 SLC25A27 2.333854 SLC36A1 SLC9A8 2.44206 SLC9B2 2.599457 SLC25A25 2.291076 ABCC5-AS1 SLC2A13 2.402028 ABCA5 2.493851 SLC9A8 2.282608 SLC27A4 SLC16A4 2.358955 SLC16A1-AS1 2.477815 SLC35C1 2.276645 SLC35D1 SLC39A4 2.353052 SLC2A10 2.350852 SLC36A1 2.25587 SLC16A7 SLC31A2 2.298712 SLC27A1 2.291298 SLC25A52 2.144389 SLC2A14 SLC7A2 2.197604 SLC22A5 2.280795 CLDN15 2.086779 SLC9A8 ABCA11P 2.162356 ABCA11P 2.183504 SLC12A7 2.036138 SLC2A13 SLC4A11 2.067843 CAV2 2.170436 SLC22A5 1.881857 SLC16A4 ABCA9 2.062904 ABCA3 1.994074 CLDN20 1.839093 SLC39A4 SLC16A13 2.041291 SLC35D1 1.887128 SLC16A13 1.817148 SLC31A2 SLC9A9 2.037834 SLC16A13 1.859779 ABCG1 1.806817 SLC7A2 SLC39A3 2.026507 SLC47A1 1.858928 SLC45A3 1.784481 ABCA11P SLC35C1 1.972902 CLDN15 1.716215 ABCB6 1.683963 SLC4A11 SLC22A4 1.953524 SLC45A3 1.682159 SLC12A9 1.630878 ABCA9 SLC37A1 1.81226 CLDN20 1.680569 SLC31A2 1.611464 SLC16A13 SLC17A9 1.769929 SLC8B1 1.570282 SLC25A21- 1.601919 AS1 SLC9A9 SLC22A23 1.764406 SLC16A7 1.551389 SLC27A1 1.522368 SLC39A3 SLC16A1-AS1 1.72676 FLT1 1.482148 SLC8B1 1.494263 SLC35C1 SLC44A5 1.701749 ABCB9 1.398731 SLC39A13 1.450947 SLC22A4 ABCA8 1.652087 SLC35C1 1.398033 SLC43A2 1.332146 SLC37A1 SLC12A9 1.61651 SLC31A2 1.374391 ABCA5 1.31138 SLC17A9 SLC2A4RG 1.6131 SLC1A4 1.324516 SLC4A11 1.28855 SLC22A23 SLC7A5P2 1.608011 SLC43A2 1.288621 SLC19A1 1.25397 SLC16A1-AS1 OCLN 1.607414 SLC41A2 1.20395 ABCA3 1.246954 SLC44A5 SLC26A11 1.591181 SLC25A52 1.028764 JAM2 1.205741 ABCA8 CLDN15 1.554813 SLC4A11 0.96161 SLC46A3 1.139848 SLC12A9 SLC52A2 1.544335 ABCC5-AS1 0.866443 SLC27A3 1.053088 SLC2A4RG SLC2A11 1.532439 SLC39A4 0.851669 ABCB9 0.950726 SLC7A5P2 SLC30A4 1.511683 SLC35G2 0.792349 SLC2A6 0.942145 OCLN SLC12A7 1.489623 SLC9A3R2 0.752173 SLC9A3R2 0.876967 SLC26A11 SLC27A3 1.47873 SLC43A1 0.628691 ABCC5-AS1 0.677266 CLDN15 ABCC10 1.474117 SLC17A9 0.548714 SLCO4A1 0.653575 SLC52A2 SLC16A9 1.470279 SLCO4A1 0.501681 SLC16A1-AS1 0.633586 SLC2A11 SLC2A8 1.431852 CLDN14 0.495563 SLC16A7 0.62852 SLC30A4 ICAM1 1.413326 SLC35E4 0.479577 SLC35E4 0.624779 SLC12A7 SLC19A1 1.408644 SLC46A3 0.435388 SLC47A1 0.581222 SLC27A3 SLC25A34 1.328311 CLDN11 0.434721 CLDN14 0.548041 ABCC10 SLC2A12 1.320097 SLC2A6 0.430468 SLC39A4 0.499288 SLC16A9 SLC2A6 1.295948 JAM2 0.423 ICAM1 0.489275 SLC2A8 SLC39A11 1.292349 SLC25A34 0.397096 SLC22A4 0.486925 ICAM1 SLC35G1 1.274349 ABCG1 0.361173 SLC25A34 0.310395 SLC19A1 ABCA1 1.261972 SLC7A11-AS1 0.327711 SLC7A11-AS1 0.292754 SLC25A34 SLC16A5 1.239062 ICAM1 0.312971 VWF 0.215762 SLC2A12 SLC25A27 1.123599 SLC22A4 0.311468 SLC9A9 0.175152 SLC2A6 SLC25A21- 1.101742 SLC9A9 0.280095 PECAM1 0.142662 AS1 SLC39A11 SLC27A1 1.077825 VWF 0.207022 SLC43A1 0.140407 SLC35G1 SLC43A2 1.056906 PECAM1 0.091256 ABCA6 0.059977 ABCA1 CLDN20 1.054052 ABCA8 0.071191 ABCA9 0.050411 SLC16A5 SLCO4A1 1.048847 ABCA6 0.038365 SLC17A9 0 SLC25A27 CLDN10 1.042052 ABCA9 0 ABCA8 0 SLC25A21- SLC22A5 1.033148 ICAM2 0 ICAM2 0 AS1 SLC27A1 JAM2 1.027943 SLC15A4 0 SLC15A4 0 SLC43A2 ABCB9 1.010985 CLDN5 0 CLDN5 0 CLDN20 SLCO4A1 CLDN10 SLC22A5 JAM2 ABCB9 SLCO3A1 ABCB8 SLC15A3 SLC25A21 SLC39A2 SLC24A5 SLC4A5 SLC8A1 ICAM3 CLDN10-AS1 SLC35G6 SLC5A4 ABCC6P2 ABCA2 SLC25A22 SLC7A8 SLC25A35 SLC25A53 SLC29A3 SLC25A10 SLC35G5 SLC25A51P1 SLC9B1 SLC23A3 ABCC6 SLC5A10 SLC37A2 SLC35G3 SLC25A18 SLC45A2 SLC26A5 SLC51A ABCC2 ABCG4 SLC46A1 SLC9A9-AS1 ABCA4 SLC34A1 SLC9A5 SLC25A30- AS1 SLC25A45 SLC7A3 SLC23A1 SLC45A4 ABCD1 SLC7A5P1 SLC2A4 SLC25A42 ABCA10 CLDN1 SLC25A5-AS1 SLC22A17 CLDN2 SLC38A4 SLC6A1OP SLC44A3 SLC26A4 SLC6A9 SLC9A7P1 SLC36A2 SLC27A6 SLCO1A2 SLC6A4 SLC29A4 SLC26A3 SLC6A2 SLC17A7 SLC38A5 SLC8A1-AS1 SLC15A1 ABCA17P SLC35G4P SLCO4A1-AS1 SLC22A6 SLC47A2 SLC1A6 SLC26A9 SLC13A3 SLC35D3 SLC27A5 SLC22A20 SLC4A4 SLC35F1 SLC2A5 SLC28A2 SLC38A3 SLC26A4-AS1 SLC14A1 SLC16A6 SLC17A8 SLC22A13 SLC24A3 SLC10A5 SLC15A2 SLC4A10 SLC38A8 SLC22A18 SLC22A18AS SLC13A4 ABCC11 SLC28A3 SLC4A9 SLC5A12 ABCB1 SLC5A1 SLC13A5 SLC10A1 CLDN16 SLC5A8 SLC22A25 SLC26A1 ABCC9 ABCF1 ABCA7 SLC35F4 SLC12A8 SLC8A3 SLC6A20 SLC17A4 SLC25A31 CLDN4 SLC6A7 SLC10A2 SLC1A2 SLC24A4 SLC11A1 SLC12A5 CLDN23 SLC6A11 CLDN9 SLC30A3 SLCO2A1 SLC10A4 SLC24A2 SLC39A12 SLC26A7 SLC16A14 SLC9C2 SLC27A2 SLC6A1 ABCA12 SLC12A1 SLC22A9 SLC22A15 SLC52A1 ABCB11 SLC1A7 SLC46A2 SLCO6A1 SLC22A11 SLC22A10 SLC32A1 ABCC3 ABCC12 SLCO4C1 ABCB5 SLC9A2 ABCC6P1 ABCG5 SLC9A3 SLCO1B1 ABCC13 SLC6A12 SLC16A10 SLC15A5 SLCO1B3 SLCO1C1 CLDN18 SLC5A9 SLC2A2 SLCO5A1 SLC7A14 ABCA13 SLC19A3 ABCB4 SLCO2B1 SLC34A2 SLC9A4 SLC16A12 ABCC8 SLC4A1 SLC8A2 SLC5A7 SLC6A19 ABCD2 SLC6A17 SLC25A3P1 SLC2A1-AS1 SLC51B SLC52A3 SLC6A1-AS1 SLC9C1 CLDN6 SLC39A7 SLC1A3 SLC29A2 TJP3 CLDN3 SLC7A4 SLC25A41 CLDN19 SLC4A3 CLDND2 CLDN8 SLC30A2 SLC44A4 SLC16A11 CLDN24 SLC13A2 SLC18A3 SLC22A24 SLC35F3 SLC6A16 SLC16A8 SLC25A48 SLC12A3 SLC22A3 SLC25A2 SLC6A13 SLC45A1 SLC6A3 SLC5A5 ABCG8 SLC34A3 SLC22A12 SLC2A9 SLC22A31 SLC14A2 SLC26A10 ICAM4 CLDN17 SLC22A7 SLC6A18 SLC36A3 SLC22A2 SLC25A47 SLC22A14 SLC22A16 SLC17A2 SLC13A1 SLC30A8 SLC30A10 SLC2A7 SLC6A5 SLC7A9 SLC26A8 SLC38A11 SLC17A1 SLC22A1 SLC22A8 SLC17A6 SLC3A1 SLC7A13 SLC5A2 VCAM1 SLC18A1 SLC28A1 SLC7A10 CLDN22 CLDN25 SLC10A6 SLC17A3 SLC39A5 SLC5A11 SLC6A14 SLCO1B7 

We claim:
 1. A method for generating a population of human brain microvascular endothelial cells (BMECs) from human pluripotent stem cells, wherein the method comprises, in order, (a) culturing human pluripotent stem cells for about 24 hours in a chemically defined, serum-free culture medium that comprises an activator of Wnt/β-catenin signaling, whereby cells that express mesodermal markers are obtained; (b) culturing the cells expressing mesodermal markers for about 5 days in the presence of a chemically defined, serum-free culture medium comprising a neuronal cell culture supplement, whereby cells that express endothelial progenitor marker Flk-1 are obtained; and (c) culturing the Flk-1+ cells of (b) for about two days in the presence of a chemically defined, serum-free endothelial medium comprising a neuronal cell culture supplement, bFGF/FGF2, and retinoic acid (RA), whereby a cell population comprising human BMECs is obtained.
 2. The method of claim 1, wherein the human pluripotent stem cells of (a) are cultured in a chemically defined, serum-free culture medium at a cell density of about 35×10³ cells/cm′ for about 3 days prior to exposure to the chemically defined, serum-free culture medium comprising an activator of Wnt/β-catenin signaling.
 3. The method of claim 1, wherein at least 95% of cells of the cell population comprising human BMECs are BMECs positive for expression of one or more of CD31, p-glycoprotein (Pgp), occludin, and claudin-5.
 4. The method of claim 1, further comprising growing the human BMECs of step (c) as a monolayer to confluence.
 5. The method of claim 4, comprising the step of taking an initial transendothelial electrical resistance (TEER) measurement of the confluent monolayer, wherein the TEER measurement is greater than 2000 Ohm (Ω)×cm².
 6. The method of claim 1, wherein the activator of Wnt/β-catenin signaling is a Gsk3 inhibitor.
 7. The method of claim 6, wherein the Gsk3 inhibitor is a small molecule selected from the group consisting of CHIR99021, CHIR98014, BIO-acetoxime, BIO, LiCl, SB216763, SB415286, AR A014418, 1-Azakenpaullone, and Bis-7-indolylmaleimide.
 8. The method of claim 6, wherein the Gsk3 inhibitor is CHIR99021 and is present in a concentration of about 3 μM to about 12 μM.
 9. The method of claim 1, wherein no selecting, separating, or enriching steps are applied to the cells of step (a), (b), and (c) to generate the cell population of human BMECs. 